Sequence Similarity Clusters for the Entities in PDB 1R4M

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2655
95 % 8 9 2524 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 8 9 2580
70 % 8 9 2615
50 % 8 9 2669
40 % 8 9 2670
30 % 8 9 2628
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6489
95 % 7 8 2663 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 7 8 2722
70 % 7 8 2685
50 % 7 8 2697
40 % 7 8 2714
30 % 7 8 2676
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 2014
95 % 8 11 3334 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 8 11 3392
70 % 14 18 1611
50 % 392 534 11
40 % 392 538 16
30 % 403 558 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76 9606
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9606
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 4GU2 1 A Ubiquitin 5759
27 3A9K 1 A Ubiquitin 10090
28 3A9K 2 B Ubiquitin 10090
29 4HK2 1 A, B, C, D Ubiquitin 9606
30 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
31 1XD3 2 B, D UBC protein 9606
32 5NLF 1 A, B, C Polyubiquitin-C 9606
33 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
34 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
35 4UN2 1 A UBIQUITIN 9606
36 5VBT 1 A, B UBH04 32630
37 4PIH 1 A, B Ubiquitin 9606
38 2ZCC 1 A, B, C Ubiquitin 9913
39 4PIJ 1 A, B Ubiquitin 9606
40 5NLI 1 A, B, C Polyubiquitin-C 9606
41 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
42 5YT6 1 A, C, E, G Ubiquitin 9606
43 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
44 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
45 4FBJ 2 B NEDD8 9606
46 3BY4 2 B Ubiquitin 9606
47 6FDK 2 B Polyubiquitin-B 9606
48 5K9P 1 A Polyubiquitin-B 9606
49 5NLJ 1 A, B, C Polyubiquitin-B 9606
50 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
51 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
52 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
53 2ZNV 2 B, E Ubiquitin 10090
54 2ZNV 3 C, F Ubiquitin 10090
55 2GBM 1 A, B, C, D Ubiquitin 9606
56 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
57 5EMZ 1 A, C, E Polyubiquitin-B 9606
58 5EMZ 2 B, D, F Polyubiquitin-B 9606
59 6B7M 2 B, C Polyubiquitin-C 9606
60 6HEI 2 B Polyubiquitin-B 9606
61 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
62 2GBN 1 A Ubiquitin 9606
63 2ZCB 1 A, B, C Ubiquitin 9606
64 5OXI 1 A, B Ubiquitin L67S mutant 9606
65 4K1R 2 B, D Polyubiquitin-C 9606
66 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
67 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
68 4I6N 2 B, D Ubiquitin 9606
69 3V6C 2 B Ubiquitin 9606
70 5AF5 1 A POLYUBIQUITIN-C 9606
71 5J8P 1 A ubiquitin 9606
72 5J8P 2 B D-ubiquitin 9606
73 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
74 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
75 6EI1 2 B Polyubiquitin-B 9606
76 6FGE 2 C Polyubiquitin-B 9606
77 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
78 3NS8 1 A, B Ubiquitin 9606
79 5GOJ 1 A Ubiquitin 9606
80 5GOJ 2 B D-ubiquitin 9606
81 6OI4 2 C, D ubiquitin 9606
82 1UBI 1 A UBIQUITIN 9606
83 2D3G 1 A, B ubiquitin 9913
84 5GOC 1 A Ubiquitin 9606
85 5GOC 2 D D-ubiquitin 9606
86 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
87 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
88 5TXK 2 B Polyubiquitin-B 9606
89 5WFI 2 C, D Ubiquitin 9606
90 1UBQ 1 A UBIQUITIN 9606
91 6B7O 2 B, C Polyubiquitin-C 9606
92 4ZFR 2 B ubiquitin unp residues 77-152 9606
93 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
94 4HJK 1 A Ubiquitin UNP residues 87-162 9606
95 6GLC 2 B Polyubiquitin-B 9606
96 3N32 1 A Ubiquitin 9606
97 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
98 3ONS 1 A Ubiquitin 9606
99 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
100 3MHS 4 D Ubiquitin 9606
101 5M93 1 A, B, C Polyubiquitin-B 9606
102 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
103 2HD5 2 B Polyubiquitin residues 1-76 9913
104 5NMC 1 A, B, C Polyubiquitin-C 9606
105 5GOI 1 A, B Ubiquitin 9606
106 5GOI 2 C, D D-ubiquitin 9606
107 1WRD 2 B Ubiquitin 9913
108 5GVI 2 B ubiquitin 10090
109 5GVI 3 C ubiquitin 10090
110 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
111 2BKR 2 B NEDDYLIN 9606
112 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
113 2FCS 1 A, B Ubiquitin residues 1-76 9606
114 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
115 5V1Z 2 C, D Ubiquitin 9606
116 3ALB 1 A, B, C, D ubiquitin 9606
117 6GZS 2 B Polyubiquitin-B 9606
118 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
119 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
120 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
121 4PIG 1 A, B, C, D Ubiquitin 9606
122 5X3M 1 A Polyubiquitin-B 9606
123 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
124 5NL5 1 A, B, C Polyubiquitin-B 9606
125 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
126 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
127 4LDT 2 B Ubiquitin aldehyde 9606
128 4LDT 4 D Ubiquitin 9606
129 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
130 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
131 2QHO 1 A, C, E, G Ubiquitin 9913
132 3H7P 1 A Ubiquitin 9606
133 3H7P 2 B Ubiquitin 9606
134 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
135 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
136 5GO7 1 A Ubiquitin 9606
137 5GO7 2 B D-ubiquitin 9606
138 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
139 1P3Q 2 U, V Ubiquitin 9913
140 2OOB 2 B Ubiquitin 9913
141 5ULF 2 B, D Ubiquitin 9606
142 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
143 6ISU 2 B Ubiquitin 9606
144 6ISU 3 C Ubiquitin 9606
145 4F8C 2 B, D NEDD8 9606
146 5ULH 2 B Ubiquitin 9606
147 3HM3 1 A, B, C, D Ubiquitin 9606
148 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
149 5GOK 1 A Ubiquitin 9606
150 5GOK 2 B D-ubiquitin 9606
151 4WLR 3 C Polyubiquitin-B 9606
152 3WWQ 1 A, D, G, J Ubiquitin 10090
153 3WWQ 2 B, E, H, K Ubiquitin 10090
154 5JG6 2 B, C Polyubiquitin-B 9606
155 3EFU 1 A Ubiquitin 9606
156 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
157 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
158 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
159 4IG7 2 B Ubiquitin 9606
160 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
161 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
162 5WVO 1 A, B Ubiquitin 9606
163 3V6E 2 B Ubiquitin 9606
164 1UZX 2 B UBIQUITIN 9913
165 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
166 1S1Q 2 B, D ubiquitin 9606
167 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
168 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
169 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
170 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
171 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
172 2GBR 1 A, B, C Ubiquitin 9606
173 4XKL 1 A, C Ubiquitin 9606
174 4FJV 2 B, D Polyubiquitin-C 9606
175 5DFL 1 B Ubiquitin 9606
176 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
177 5HPS 2 B Ubiquitin variant P1.1 9606
178 5GOH 1 A Ubiquitin 9606
179 5GOH 2 D D-ubiquitin 9606
180 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
181 2G45 2 B, E Ubiquitin 9606
182 6AQR 4 D Polyubiquitin-C 9606
183 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
184 5ZQ3 2 C, D Ubiquitin 9606
185 5ZQ4 2 C, D ubiquitin 9606
186 4GSW 1 A, B Ubiquitin 5759
187 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
188 1SIF 1 A ubiquitin 9606
189 5JBY 1 A, C, E ubiquitin 9606
190 5JBY 2 B, D, F D-ubiquitin 9606
191 5IFR 2 B Polyubiquitin-B 9606
192 2IBI 2 B Ubiquitin 9606
193 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
194 6JB7 1 B Ubiquitin 9606
195 5GOG 1 A Ubiquitin 9606
196 5GOG 2 B D-ubiquitin 9606
197 2GBK 1 A, B, C, D Ubiquitin 9606
198 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
199 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
200 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
201 6DGF 2 B Polyubiquitin-B 9606
202 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
203 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
204 1XT9 2 B Neddylin 9606
205 1AAR 1 A, B DI-UBIQUITIN 9913
206 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
207 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
208 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
209 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
210 2WX0 1 A, B, E, F UBIQUITIN 9913
211 3A1Q 1 A, D Ubiquitin 10090
212 3A1Q 2 B, E Ubiquitin 10090
213 5HPL 2 C, D Ubiquitin variant R5.4 9606
214 5TR4 2 B, D Ubiquitin 9913
215 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
216 3H7S 1 A, B Ubiquitin 9606
217 3C0R 2 B, D Ubiquitin 9606
218 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
219 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
220 2C7M 2 B UBIQUITIN 9913
221 1TBE 1 A, B TETRAUBIQUITIN 9606
222 3PT2 2 B Ubiquitin B 9606
223 5VZW 2 C, D Ubiquitin 9606
224 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
225 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
226 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
227 5GO8 1 A ubiquitin 9606
228 5GO8 2 B D-ubiquitin 9606
229 3A33 2 B Ubiquitin 9606
230 3VHT 3 C Ubiquitin 10090
231 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
232 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
233 6ASR 1 A, C Ubiquitin residues 1-76 9606
234 2FCN 1 A, B Ubiquitin residues 1-76 9606
235 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
236 4DHJ 3 D, H Ubiquitin 9606
237 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
238 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
239 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
240 4NQL 2 B Ubiquitin 10090
241 4NQL 3 C Ubiquitin 10090
242 6NJG 2 C Polyubiquitin-B 9606
243 1NBF 2 C, D Ubiquitin aldehyde 9606
244 2O6V 1 A, C, E, G Ubiquitin 9606
245 2O6V 2 B, F Ubiquitin 9606
246 2O6V 3 D, H Ubiquitin 9606
247 3OFI 2 C, D Ubiquitin 9606
248 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
249 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
250 5JBV 1 A Ubiquitin 9606
251 5JBV 2 B D-ubiquitin 9606
252 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
253 5X3O 2 D D-ubiquitin 9606
254 5ULK 2 B Ubiquitin 9606
255 5ZQ5 2 B, D Ubiquitin 9606
256 6FX4 2 B, D Polyubiquitin-B 9606
257 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
258 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
259 3IFW 2 B Ubiquitin 9606
260 3N3K 2 B Ubiquitin 9606
261 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
262 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
263 2FCM 1 A, B Ubiquitin residues 1-76 9606
264 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
265 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
266 5HPK 2 B Ubiquitin variant NL.1 9606
267 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
268 3I3T 2 B, D, F, H Ubiquitin 9606
269 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
270 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
271 5OHK 2 B Polyubiquitin-B 9606
272 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
273 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
274 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
275 4HCP 2 B NEDD8 unp residues 1-76 9606
276 3O65 2 B, D, F, H Ubiquitin 9606
277 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
278 6IF1 2 C, D Ubiquitin 9606
279 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
280 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
281 5XPK 1 A Ubiquitin 9606
282 5XPK 2 B D-ubiquitin 9606
283 5XDP 1 B D-ubiquitin 9606
284 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
285 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
286 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
287 5OHV 1 A, C Ubiquitin 9606
288 5KNL 2 B, E Ubiquitin 84753
289 4I6L 2 B Ubiquitin UNP residues 77-150 9606
290 5TUT 2 B Ubiquitin 9606
291 3OLM 2 D Ubiquitin 4932
292 3CMM 2 B, D Ubiquitin 559292
293 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
294 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
295 4MM3 1 A Ubiquitin UNP residues 1-76 9606
296 2FIF 1 A, C, E Ubiquitin 9913
297 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
298 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
299 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
300 2XBB 2 C, D UBIQUITIN 9913
301 2GMI 3 C Ubiquitin 9606
302 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
303 5J26 1 B Ubiquitin Variant i53 9606
304 3DVG 3 X Ubiquitin D77 9606
305 3DVG 4 Y Ubiquitin 9606
306 1WR6 2 E, F, G, H ubiquitin 9913
307 3LDZ 1 E, F, G Ubiquitin 9913
308 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
309 6BVA 3 A, B Polyubiquitin-B 9606
310 5ZQ7 2 B, D Ubiquitin 9606
311 3RUL 1 A, B, C, D Ubiquitin 9606
312 5BNB 2 E, F, G, I Polyubiquitin-B 9606
313 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
314 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
315 4XOK 1 A, B, C Ubiquitin 9606
316 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
317 5ZQ6 2 B, D Ubiquitin 9606
318 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
319 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
320 3DVN 3 U, X Ubiquitin D77 9606
321 3DVN 4 V, Y Ubiquitin 9606
322 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
323 1F9J 1 A, B TETRAUBIQUITIN 9606
324 6BYH 3 C, D, H Polyubiquitin-B 9606
325 2FID 1 A Ubiquitin 9913
326 5OHP 2 B, C Polyubiquitin-B 9606
327 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
328 1YD8 1 U, V UBIQUIN 9913
329 4BOZ 2 B, C, E UBIQUITIN-C 9606
330 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
331 3WXG 2 B, E Ubiquitin 10090
332 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
333 6CP2 3 C Polyubiquitin-B 9606
334 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
335 3IHP 2 C, D Ubiquitin 9606
336 5LN1 2 U Polyubiquitin-B 9606
337 3K9P 2 B Ubiquitin 9606
338 3DBH 3 I, J, K, L NEDD8 9606
339 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
340 6JB6 1 B Ubiquitin 9606
341 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
342 3JSV 1 A Ubiquitin 9606
343 3JSV 2 B Ubiquitin 9606
344 3DBL 3 I, J, K, L NEDD8 9606
345 3TBL 2 D, E Ubiquitin 9606
346 2HTH 1 A Ubiquitin 9606
347 3KW5 2 B Ubiquitin 9606
348 6EQI 1 A Ubiquitin 9606
349 5E6J 2 B, E ubiquitin 32630
350 5E6J 3 C, F Polyubiquitin-B 32630
351 2NVU 4 I, J NEDD8 9606
352 2XK5 1 A UBIQUITIN 9606
353 2XK5 2 B UBIQUITIN 9606
354 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
355 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
356 3KVF 2 B Ubiquitin 9606
357 6FYH 2 B Polyubiquitin-B 9606
358 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
359 3H1U 1 A, B Ubiquitin 9913
360 6HEK 2 B, D Polyubiquitin-B 9606
361 5JTJ 2 B Polyubiquitin-B 9606
362 2WX1 1 A, B UBIQUITIN 9913
363 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
364 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
365 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
366 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
367 6DC6 2 B, D Ubiquitin 9606
368 4XOL 1 A, B Ubiquitin 9606
369 5JP3 2 B, D, F, H Polyubiquitin-B 9606
370 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
371 3GZN 3 I, J NEDD8 9606
372 5O44 1 A, E Ubiquitin 7370
373 5O44 2 B, C Polyubiquitin-B 9606
374 5O44 3 D, F Polyubiquitin-B 9606
375 3PHD 2 E, F, G, H Polyubiquitin 9606
376 3DBR 3 I, J, K, L NEDD8 9606
377 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
378 5ZBU 3 E Ubiquitin 9606
379 3N30 1 A, B Ubiquitin 9606
380 4P5O 5 H, K NEDD8 9606
381 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
382 3JVZ 3 X, Y Ubiquitin 9606
383 4DHZ 2 B Ubiquitin aldehyde 9606
384 4DHZ 3 E Ubiquitin 9606
385 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
386 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
387 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
388 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
389 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
390 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
391 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
392 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
393 3JW0 3 X, Y Ubiquitin 9606
394 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
395 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
396 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
397 5JTV 2 B, D, F, H Polyubiquitin-B 9606
398 5OHN 2 B, D Polyubiquitin-B 9606
399 5TTE 3 F ubiquitin unp residues 1-76 4565
400 2FCQ 1 A, B Ubiquitin residues 1-76 9606
401 3EEC 1 A, B Ubiquitin 9606
402 5VNZ 3 C, F Ubiquitin 9606
403 6H4H 2 C, D Polyubiquitin-B 9606
404 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
405 6C16 3 D, H Polyubiquitin-B 9606
406 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
407 5H7S 1 E, F Ubiquitin-like 1 9606
408 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
409 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
410 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
411 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
412 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
413 2DX5 2 B Ubiquitin 9913
414 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
415 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
416 5VO0 3 C, F Ubiquitin 9606
417 6DJW 2 B Ubiquitin 9913
418 2AYO 2 B Ubiquitin 9606
419 5KHY 1 A Polyubiquitin-B 9606
420 5KHY 2 B Polyubiquitin-B 9606
421 6DJX 2 B Ubiquitin 9913
422 4JIO 2 U Ubiquitin 9606
423 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
424 6O96 8 L Polyubiquitin-B 9606
425 6JMA 7 Y Ubiquitin 9606
426 6JLT 1 A ubiquitin 9606
427 6J99 7 L Ubiquitin 9606
428 6NQA 7 L Ubiquitin 9606
429 6NOG 5 L Ubiquitin 9606
430 6NN6 8 L Ubiquitin 9606
431 6QF8 1 A Polyubiquitin-B 9606
432 6NJ9 5 L Ubiquitin 9606
433 6N13 2 D ubiquitin 9606
434 6N13 4 A phosphoubiquitin 9606
435 6MSB 19 u, w Ubiquitin 9606
436 6MSD 19 u, w Ubiquitin 9606
437 6MSE 19 u Ubiquitin 9606
438 6MSG 19 u Ubiquitin 9606
439 6FTX 8 N, O Polyubiquitin-B 9606
440 5YMY 1 A Ubiquitin 9606
441 5YMY 2 B Ubiquitin 9606
442 5VZM 1 A Ubiquitin UNP residues 1-76 9606
443 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
444 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
445 5VEY 2 B Polyubiquitin-B 9606
446 5VF0 1 A Polyubiquitin-B 9606
447 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
448 5UJL 1 A, B Ubiquitin residues 1-76 9606
449 5UJN 1 A, B Ubiquitin 9606
450 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
451 5KGF 8 M, O Ubiquitin 9606
452 2NBD 1 A entity 9606
453 2NBE 1 A entity 9606
454 2N7K 1 A NEDD8 9606
455 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
456 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
457 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
458 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
459 2N2K 1 A ubiquitin 9606
460 2N2K 2 B ubiquitin 9606
461 2N13 2 B Ubiquitin 9606
462 2N13 3 C Ubiquitin 9606
463 2MWS 1 A Ubiquitin UNP residues 1-76 9606
464 2MUR 2 B Ubiquitin 9606
465 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
466 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
467 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
468 2MOR 1 A Ubiquitin UNP residues 1-76 9606
469 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
470 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
471 2MI8 1 A Ubiquitin 9606
472 2RU6 1 A Ubiquitin 9606
473 2MCN 2 B Ubiquitin UNP residues 1-76 9606
474 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
475 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
476 2MBH 2 A Ubiquitin 9606
477 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
478 2M0X 1 A engineered ubiquitin variant 9606
479 2LZ6 1 A Ubiquitin 9606
480 2LVO 1 A Ubiquitin 9606
481 2LVP 1 A, B Ubiquitin 9606
482 2LVQ 1 A, B Ubiquitin 9606
483 2RSU 1 A Ubiquitin 9606
484 2LJ5 1 A Ubiquitin 9606
485 2LD9 1 A Ubiquitin 9606
486 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
487 2L0T 1 A Ubiquitin 9606
488 2L0F 1 A Ubiquitin 9606
489 2L00 2 B Ubiquitin ubiquitin core domain 4932
490 2RR9 1 A, B ubiquitin 9606
491 2KWV 2 B Ubiquitin 9606
492 2KWU 2 B Ubiquitin 9606
493 2KTF 1 A Ubiquitin 9606
494 2KOX 1 A Ubiquitin 9606
495 2KO3 1 A NEDD8 9606
496 2KN5 1 A Ubiquitin 9606
497 2KLG 1 A Ubiquitin 9606
498 2KJH 2 B Ubiquitin 9606
499 2KHW 2 B Ubiquitin 9606
500 2KDE 2 B, C Ubiquitin 8355
501 2KDF 2 B, C Ubiquitin 9606
502 2K8B 1 A Ubiquitin 9606
503 2K8C 1 A Ubiquitin 9606
504 2K6D 2 B Ubiquitin ubiquitin 9606
505 2K39 1 A Ubiquitin 8355
506 2JZZ 1 A Ubiquitin 9606
507 2JY6 1 A Ubiquitin protein 9606
508 2JWZ 1 A Ubiquitin 4932
509 2JVC 1 A ubiquitin_like protein
510 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
511 2Z59 2 B Ubiquitin 9606
512 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
513 2PE9 1 A, B Ubiquitin 9606
514 2PEA 1 A, B Ubiquitin 9606
515 2NR2 1 A Ubiquitin 9606
516 2G3Q 2 B Ubiquitin 4932
517 2DEN 2 B Ubiquitin 9606
518 2FUH 2 B Ubiquitin Ubiquitin 10116
519 1ZW7 1 A Ubiquitin 4932
520 1ZGU 2 B Ubiquitin 9606
521 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
522 1XQQ 1 A ubiquitin 9606
523 1WR1 1 A Ubiquitin 4932
524 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
525 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
526 1Q5W 2 B Ubiquitin 9606
527 1Q0W 2 B Ubiquitin 4932
528 1OTR 2 B Ubiquitin 4932
529 1G6J 1 A UBIQUITIN 9606
530 1FXT 2 B UBIQUITIN 9606
531 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
532 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
533 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
534 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702