Sequence Similarity Clusters for the Entities in PDB 1R4M

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2643
95 % 8 9 2554 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 8 9 2619
70 % 8 9 2658
50 % 8 9 2677
40 % 8 9 2694
30 % 8 9 2650
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6501
95 % 7 8 2663 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 7 8 2730
70 % 7 8 2698
50 % 7 8 2701
40 % 7 8 2722
30 % 7 8 2677
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 2023
95 % 8 11 3346 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 8 11 3418
70 % 14 18 1615
50 % 394 536 11
40 % 394 540 16
30 % 404 556 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76 9606
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9606
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 4GU2 1 A Ubiquitin 5759
27 3A9K 1 A Ubiquitin 10090
28 3A9K 2 B Ubiquitin 10090
29 4HK2 1 A, B, C, D Ubiquitin 9606
30 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
31 1XD3 2 B, D UBC protein 9606
32 5NLF 1 A, B, C Polyubiquitin-C 9606
33 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
34 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
35 4UN2 1 A UBIQUITIN 9606
36 5VBT 1 A, B UBH04 32630
37 4PIH 1 A, B Ubiquitin 9606
38 2ZCC 1 A, B, C Ubiquitin 9913
39 4PIJ 1 A, B Ubiquitin 9606
40 5NLI 1 A, B, C Polyubiquitin-C 9606
41 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
42 5YT6 1 A, C, E, G Ubiquitin 9606
43 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
44 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
45 4FBJ 2 B NEDD8 9606
46 3BY4 2 B Ubiquitin 9606
47 6FDK 2 B Polyubiquitin-B 9606
48 5K9P 1 A Polyubiquitin-B 9606
49 5NLJ 1 A, B, C Polyubiquitin-B 9606
50 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
51 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
52 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
53 2ZNV 2 B, E Ubiquitin 10090
54 2ZNV 3 C, F Ubiquitin 10090
55 2GBM 1 A, B, C, D Ubiquitin 9606
56 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
57 5EMZ 1 A, C, E Polyubiquitin-B 9606
58 5EMZ 2 B, D, F Polyubiquitin-B 9606
59 6B7M 2 B, C Polyubiquitin-C 9606
60 6HEI 2 B Polyubiquitin-B 9606
61 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
62 2GBN 1 A Ubiquitin 9606
63 2ZCB 1 A, B, C Ubiquitin 9606
64 5OXI 1 A, B Ubiquitin L67S mutant 9606
65 4K1R 2 B, D Polyubiquitin-C 9606
66 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
67 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
68 4I6N 2 B, D Ubiquitin 9606
69 3V6C 2 B Ubiquitin 9606
70 5AF5 1 A POLYUBIQUITIN-C 9606
71 5J8P 1 A ubiquitin 9606
72 5J8P 2 B D-ubiquitin 9606
73 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
74 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
75 6EI1 2 B Polyubiquitin-B 9606
76 6FGE 2 C Polyubiquitin-B 9606
77 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
78 3NS8 1 A, B Ubiquitin 9606
79 5GOJ 1 A Ubiquitin 9606
80 5GOJ 2 B D-ubiquitin 9606
81 6OI4 2 C, D ubiquitin 9606
82 1UBI 1 A UBIQUITIN 9606
83 2D3G 1 A, B ubiquitin 9913
84 5GOC 1 A Ubiquitin 9606
85 5GOC 2 D D-ubiquitin 9606
86 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
87 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
88 5TXK 2 B Polyubiquitin-B 9606
89 5WFI 2 C, D Ubiquitin 9606
90 1UBQ 1 A UBIQUITIN 9606
91 6B7O 2 B, C Polyubiquitin-C 9606
92 4ZFR 2 B ubiquitin unp residues 77-152 9606
93 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
94 4HJK 1 A Ubiquitin UNP residues 87-162 9606
95 6GLC 2 B Polyubiquitin-B 9606
96 3N32 1 A Ubiquitin 9606
97 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
98 3ONS 1 A Ubiquitin 9606
99 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
100 3MHS 4 D Ubiquitin 9606
101 5M93 1 A, B, C Polyubiquitin-B 9606
102 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
103 2HD5 2 B Polyubiquitin residues 1-76 9913
104 5NMC 1 A, B, C Polyubiquitin-C 9606
105 5GOI 1 A, B Ubiquitin 9606
106 5GOI 2 C, D D-ubiquitin 9606
107 1WRD 2 B Ubiquitin 9913
108 5GVI 2 B ubiquitin 10090
109 5GVI 3 C ubiquitin 10090
110 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
111 2BKR 2 B NEDDYLIN 9606
112 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
113 2FCS 1 A, B Ubiquitin residues 1-76 9606
114 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
115 5V1Z 2 C, D Ubiquitin 9606
116 3ALB 1 A, B, C, D ubiquitin 9606
117 6GZS 2 B Polyubiquitin-B 9606
118 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
119 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
120 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
121 4PIG 1 A, B, C, D Ubiquitin 9606
122 5X3M 1 A Polyubiquitin-B 9606
123 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
124 5NL5 1 A, B, C Polyubiquitin-B 9606
125 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
126 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
127 4LDT 2 B Ubiquitin aldehyde 9606
128 4LDT 4 D Ubiquitin 9606
129 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
130 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
131 2QHO 1 A, C, E, G Ubiquitin 9913
132 3H7P 1 A Ubiquitin 9606
133 3H7P 2 B Ubiquitin 9606
134 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
135 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
136 5GO7 1 A Ubiquitin 9606
137 5GO7 2 B D-ubiquitin 9606
138 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
139 1P3Q 2 U, V Ubiquitin 9913
140 2OOB 2 B Ubiquitin 9913
141 5ULF 2 B, D Ubiquitin 9606
142 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
143 6ISU 2 B Ubiquitin 9606
144 6ISU 3 C Ubiquitin 9606
145 4F8C 2 B, D NEDD8 9606
146 5ULH 2 B Ubiquitin 9606
147 3HM3 1 A, B, C, D Ubiquitin 9606
148 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
149 5GOK 1 A Ubiquitin 9606
150 5GOK 2 B D-ubiquitin 9606
151 4WLR 3 C Polyubiquitin-B 9606
152 3WWQ 1 A, D, G, J Ubiquitin 10090
153 3WWQ 2 B, E, H, K Ubiquitin 10090
154 5JG6 2 B, C Polyubiquitin-B 9606
155 3EFU 1 A Ubiquitin 9606
156 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
157 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
158 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
159 4IG7 2 B Ubiquitin 9606
160 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
161 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
162 5WVO 1 A, B Ubiquitin 9606
163 3V6E 2 B Ubiquitin 9606
164 1UZX 2 B UBIQUITIN 9913
165 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
166 1S1Q 2 B, D ubiquitin 9606
167 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
168 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
169 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
170 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
171 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
172 2GBR 1 A, B, C Ubiquitin 9606
173 4XKL 1 A, C Ubiquitin 9606
174 4FJV 2 B, D Polyubiquitin-C 9606
175 5DFL 1 B Ubiquitin 9606
176 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
177 5HPS 2 B Ubiquitin variant P1.1 9606
178 5GOH 1 A Ubiquitin 9606
179 5GOH 2 D D-ubiquitin 9606
180 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
181 2G45 2 B, E Ubiquitin 9606
182 6AQR 4 D Polyubiquitin-C 9606
183 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
184 5ZQ3 2 C, D Ubiquitin 9606
185 5ZQ4 2 C, D ubiquitin 9606
186 4GSW 1 A, B Ubiquitin 5759
187 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
188 1SIF 1 A ubiquitin 9606
189 5JBY 1 A, C, E ubiquitin 9606
190 5JBY 2 B, D, F D-ubiquitin 9606
191 5IFR 2 B Polyubiquitin-B 9606
192 2IBI 2 B Ubiquitin 9606
193 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
194 6JB7 1 B Ubiquitin 9606
195 5GOG 1 A Ubiquitin 9606
196 5GOG 2 B D-ubiquitin 9606
197 2GBK 1 A, B, C, D Ubiquitin 9606
198 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
199 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
200 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
201 6DGF 2 B Polyubiquitin-B 9606
202 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
203 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
204 1XT9 2 B Neddylin 9606
205 1AAR 1 A, B DI-UBIQUITIN 9913
206 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
207 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
208 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
209 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
210 2WX0 1 A, B, E, F UBIQUITIN 9913
211 3A1Q 1 A, D Ubiquitin 10090
212 3A1Q 2 B, E Ubiquitin 10090
213 5HPL 2 C, D Ubiquitin variant R5.4 9606
214 5TR4 2 B, D Ubiquitin 9913
215 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
216 3H7S 1 A, B Ubiquitin 9606
217 3C0R 2 B, D Ubiquitin 9606
218 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
219 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
220 2C7M 2 B UBIQUITIN 9913
221 1TBE 1 A, B TETRAUBIQUITIN 9606
222 3PT2 2 B Ubiquitin B 9606
223 5VZW 2 C, D Ubiquitin 9606
224 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
225 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
226 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
227 5GO8 1 A ubiquitin 9606
228 5GO8 2 B D-ubiquitin 9606
229 3A33 2 B Ubiquitin 9606
230 3VHT 3 C Ubiquitin 10090
231 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
232 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
233 6ASR 1 A, C Ubiquitin residues 1-76 9606
234 2FCN 1 A, B Ubiquitin residues 1-76 9606
235 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
236 4DHJ 3 D, H Ubiquitin 9606
237 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
238 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
239 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
240 4NQL 2 B Ubiquitin 10090
241 4NQL 3 C Ubiquitin 10090
242 6NJG 2 C Polyubiquitin-B 9606
243 1NBF 2 C, D Ubiquitin aldehyde 9606
244 2O6V 1 A, C, E, G Ubiquitin 9606
245 2O6V 2 B, F Ubiquitin 9606
246 2O6V 3 D, H Ubiquitin 9606
247 3OFI 2 C, D Ubiquitin 9606
248 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
249 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
250 5JBV 1 A Ubiquitin 9606
251 5JBV 2 B D-ubiquitin 9606
252 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
253 5X3O 2 D D-ubiquitin 9606
254 5ULK 2 B Ubiquitin 9606
255 5ZQ5 2 B, D Ubiquitin 9606
256 6FX4 2 B, D Polyubiquitin-B 9606
257 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
258 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
259 3IFW 2 B Ubiquitin 9606
260 3N3K 2 B Ubiquitin 9606
261 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
262 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
263 2FCM 1 A, B Ubiquitin residues 1-76 9606
264 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
265 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
266 5HPK 2 B Ubiquitin variant NL.1 9606
267 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
268 3I3T 2 B, D, F, H Ubiquitin 9606
269 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
270 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
271 5OHK 2 B Polyubiquitin-B 9606
272 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
273 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
274 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
275 4HCP 2 B NEDD8 unp residues 1-76 9606
276 3O65 2 B, D, F, H Ubiquitin 9606
277 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
278 6IF1 2 C, D Ubiquitin 9606
279 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
280 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
281 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
282 5XPK 1 A Ubiquitin 9606
283 5XPK 2 B D-ubiquitin 9606
284 5XDP 1 B D-ubiquitin 9606
285 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
286 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
287 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
288 5OHV 1 A, C Ubiquitin 9606
289 5KNL 2 B, E Ubiquitin 84753
290 4I6L 2 B Ubiquitin UNP residues 77-150 9606
291 5TUT 2 B Ubiquitin 9606
292 3OLM 2 D Ubiquitin 4932
293 3CMM 2 B, D Ubiquitin 559292
294 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
295 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
296 4MM3 1 A Ubiquitin UNP residues 1-76 9606
297 2FIF 1 A, C, E Ubiquitin 9913
298 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
299 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
300 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
301 2XBB 2 C, D UBIQUITIN 9913
302 2GMI 3 C Ubiquitin 9606
303 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
304 5J26 1 B Ubiquitin Variant i53 9606
305 3DVG 3 X Ubiquitin D77 9606
306 3DVG 4 Y Ubiquitin 9606
307 1WR6 2 E, F, G, H ubiquitin 9913
308 3LDZ 1 E, F, G Ubiquitin 9913
309 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
310 6BVA 3 A, B Polyubiquitin-B 9606
311 5ZQ7 2 B, D Ubiquitin 9606
312 3RUL 1 A, B, C, D Ubiquitin 9606
313 5BNB 2 E, F, G, I Polyubiquitin-B 9606
314 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
315 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
316 4XOK 1 A, B, C Ubiquitin 9606
317 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
318 5ZQ6 2 B, D Ubiquitin 9606
319 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
320 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
321 3DVN 3 U, X Ubiquitin D77 9606
322 3DVN 4 V, Y Ubiquitin 9606
323 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
324 1F9J 1 A, B TETRAUBIQUITIN 9606
325 6BYH 3 C, D, H Polyubiquitin-B 9606
326 2FID 1 A Ubiquitin 9913
327 5OHP 2 B, C Polyubiquitin-B 9606
328 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
329 1YD8 1 U, V UBIQUIN 9913
330 4BOZ 2 B, C, E UBIQUITIN-C 9606
331 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
332 3WXG 2 B, E Ubiquitin 10090
333 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
334 6CP2 3 C Polyubiquitin-B 9606
335 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
336 3IHP 2 C, D Ubiquitin 9606
337 5LN1 2 U Polyubiquitin-B 9606
338 3K9P 2 B Ubiquitin 9606
339 3DBH 3 I, J, K, L NEDD8 9606
340 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
341 6JB6 1 B Ubiquitin 9606
342 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
343 3JSV 1 A Ubiquitin 9606
344 3JSV 2 B Ubiquitin 9606
345 3DBL 3 I, J, K, L NEDD8 9606
346 3TBL 2 D, E Ubiquitin 9606
347 2HTH 1 A Ubiquitin 9606
348 3KW5 2 B Ubiquitin 9606
349 6EQI 1 A Ubiquitin 9606
350 5E6J 2 B, E ubiquitin 32630
351 5E6J 3 C, F Polyubiquitin-B 32630
352 2NVU 4 I, J NEDD8 9606
353 2XK5 1 A UBIQUITIN 9606
354 2XK5 2 B UBIQUITIN 9606
355 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
356 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
357 3KVF 2 B Ubiquitin 9606
358 6FYH 2 B Polyubiquitin-B 9606
359 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
360 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
361 3H1U 1 A, B Ubiquitin 9913
362 6HEK 2 B, D Polyubiquitin-B 9606
363 5JTJ 2 B Polyubiquitin-B 9606
364 2WX1 1 A, B UBIQUITIN 9913
365 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
366 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
367 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
368 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
369 6DC6 2 B, D Ubiquitin 9606
370 4XOL 1 A, B Ubiquitin 9606
371 5JP3 2 B, D, F, H Polyubiquitin-B 9606
372 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
373 3GZN 3 I, J NEDD8 9606
374 5O44 1 A, E Ubiquitin 7370
375 5O44 2 B, C Polyubiquitin-B 9606
376 5O44 3 D, F Polyubiquitin-B 9606
377 3PHD 2 E, F, G, H Polyubiquitin 9606
378 3DBR 3 I, J, K, L NEDD8 9606
379 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
380 5ZBU 3 E Ubiquitin 9606
381 3N30 1 A, B Ubiquitin 9606
382 4P5O 5 H, K NEDD8 9606
383 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
384 3JVZ 3 X, Y Ubiquitin 9606
385 4DHZ 2 B Ubiquitin aldehyde 9606
386 4DHZ 3 E Ubiquitin 9606
387 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
388 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
389 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
390 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
391 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
392 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
393 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
394 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
395 3JW0 3 X, Y Ubiquitin 9606
396 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
397 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
398 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
399 5JTV 2 B, D, F, H Polyubiquitin-B 9606
400 5OHN 2 B, D Polyubiquitin-B 9606
401 5TTE 3 F ubiquitin unp residues 1-76 4565
402 2FCQ 1 A, B Ubiquitin residues 1-76 9606
403 3EEC 1 A, B Ubiquitin 9606
404 5VNZ 3 C, F Ubiquitin 9606
405 6H4H 2 C, D Polyubiquitin-B 9606
406 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
407 6C16 3 D, H Polyubiquitin-B 9606
408 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
409 5H7S 1 E, F Ubiquitin-like 1 9606
410 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
411 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
412 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
413 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
414 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
415 2DX5 2 B Ubiquitin 9913
416 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
417 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
418 5VO0 3 C, F Ubiquitin 9606
419 6DJW 2 B Ubiquitin 9913
420 2AYO 2 B Ubiquitin 9606
421 5KHY 1 A Polyubiquitin-B 9606
422 5KHY 2 B Polyubiquitin-B 9606
423 6DJX 2 B Ubiquitin 9913
424 4JIO 2 U Ubiquitin 9606
425 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
426 6O96 8 L Polyubiquitin-B 9606
427 6JMA 7 Y Ubiquitin 9606
428 6JLT 1 A ubiquitin 9606
429 6J99 7 L Ubiquitin 9606
430 6NQA 7 L Ubiquitin 9606
431 6NOG 5 L Ubiquitin 9606
432 6NN6 8 L Ubiquitin 9606
433 6QF8 1 A Polyubiquitin-B 9606
434 6NJ9 5 L Ubiquitin 9606
435 6N13 2 D ubiquitin 9606
436 6N13 4 A phosphoubiquitin 9606
437 6MSB 19 u, w Ubiquitin 9606
438 6MSD 19 u, w Ubiquitin 9606
439 6MSE 19 u Ubiquitin 9606
440 6MSG 19 u Ubiquitin 9606
441 6FTX 8 N, O Polyubiquitin-B 9606
442 5YMY 1 A Ubiquitin 9606
443 5YMY 2 B Ubiquitin 9606
444 5VZM 1 A Ubiquitin UNP residues 1-76 9606
445 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
446 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
447 5VEY 2 B Polyubiquitin-B 9606
448 5VF0 1 A Polyubiquitin-B 9606
449 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
450 5UJL 1 A, B Ubiquitin residues 1-76 9606
451 5UJN 1 A, B Ubiquitin 9606
452 5GO0 1 A Ubiquitin, putative 5691
453 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
454 5KGF 8 M, O Ubiquitin 9606
455 2NBD 1 A entity 9606
456 2NBE 1 A entity 9606
457 2N7K 1 A NEDD8 9606
458 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
459 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
460 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
461 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
462 2N2K 1 A ubiquitin 9606
463 2N2K 2 B ubiquitin 9606
464 2N13 2 B Ubiquitin 9606
465 2N13 3 C Ubiquitin 9606
466 2MWS 1 A Ubiquitin UNP residues 1-76 9606
467 2MUR 2 B Ubiquitin 9606
468 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
469 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
470 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
471 2MOR 1 A Ubiquitin UNP residues 1-76 9606
472 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
473 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
474 2MI8 1 A Ubiquitin 9606
475 2RU6 1 A Ubiquitin 9606
476 2MCN 2 B Ubiquitin UNP residues 1-76 9606
477 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
478 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
479 2MBH 2 A Ubiquitin 9606
480 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
481 2M0X 1 A engineered ubiquitin variant 9606
482 2LZ6 1 A Ubiquitin 9606
483 2LVO 1 A Ubiquitin 9606
484 2LVP 1 A, B Ubiquitin 9606
485 2LVQ 1 A, B Ubiquitin 9606
486 2RSU 1 A Ubiquitin 9606
487 2LRW 1 A Ubiquitin, putative 185431
488 2LJ5 1 A Ubiquitin 9606
489 2LD9 1 A Ubiquitin 9606
490 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
491 2L0T 1 A Ubiquitin 9606
492 2L0F 1 A Ubiquitin 9606
493 2L00 2 B Ubiquitin ubiquitin core domain 4932
494 2RR9 1 A, B ubiquitin 9606
495 2KWV 2 B Ubiquitin 9606
496 2KWU 2 B Ubiquitin 9606
497 2KTF 1 A Ubiquitin 9606
498 2KOX 1 A Ubiquitin 9606
499 2KO3 1 A NEDD8 9606
500 2KN5 1 A Ubiquitin 9606
501 2KLG 1 A Ubiquitin 9606
502 2KJH 2 B Ubiquitin 9606
503 2KHW 2 B Ubiquitin 9606
504 2KDE 2 B, C Ubiquitin 8355
505 2KDF 2 B, C Ubiquitin 9606
506 2K8B 1 A Ubiquitin 9606
507 2K8C 1 A Ubiquitin 9606
508 2K6D 2 B Ubiquitin ubiquitin 9606
509 2K39 1 A Ubiquitin 8355
510 2JZZ 1 A Ubiquitin 9606
511 2JY6 1 A Ubiquitin protein 9606
512 2JWZ 1 A Ubiquitin 4932
513 2JVC 1 A ubiquitin_like protein
514 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
515 2Z59 2 B Ubiquitin 9606
516 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
517 2PE9 1 A, B Ubiquitin 9606
518 2PEA 1 A, B Ubiquitin 9606
519 2NR2 1 A Ubiquitin 9606
520 2DZI 1 A Ubiquitin-like protein 4A ubiquitin-like domain 9606
521 2G3Q 2 B Ubiquitin 4932
522 2DEN 2 B Ubiquitin 9606
523 2FUH 2 B Ubiquitin Ubiquitin 10116
524 1ZW7 1 A Ubiquitin 4932
525 1ZGU 2 B Ubiquitin 9606
526 1WY8 1 A Np95-like ring finger protein, isoform a ubiquitin-like domain 9606 2.3.2.27 | Details
527 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
528 1XQQ 1 A ubiquitin 9606
529 1WR1 1 A Ubiquitin 4932
530 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
531 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
532 1Q5W 2 B Ubiquitin 9606
533 1Q0W 2 B Ubiquitin 4932
534 1OTR 2 B Ubiquitin 4932
535 1G6J 1 A UBIQUITIN 9606
536 1FXT 2 B UBIQUITIN 9606
537 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
538 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
539 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
540 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702