Sequence Similarity Clusters for the Entities in PDB 1R4M

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2655
95 % 8 9 2524 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 8 9 2580
70 % 8 9 2615
50 % 8 9 2669
40 % 8 9 2670
30 % 8 9 2628
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6489
95 % 7 8 2663 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 7 8 2722
70 % 7 8 2685
50 % 7 8 2697
40 % 7 8 2714
30 % 7 8 2676
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 2014
95 % 8 11 3334 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 8 11 3392
70 % 14 18 1611
50 % 392 534 11
40 % 392 538 16
30 % 403 558 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4FBJ 2 B NEDD8 9606
2 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
3 2BKR 2 B NEDDYLIN 9606
4 4F8C 2 B, D NEDD8 9606
5 1XT9 2 B Neddylin 9606
6 4HCP 2 B NEDD8 unp residues 1-76 9606
7 2NVU 4 I, J NEDD8 9606
8 3GZN 3 I, J NEDD8 9606
9 4P5O 5 H, K NEDD8 9606
10 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
11 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
12 2N7K 1 A NEDD8 9606
13 2KO3 1 A NEDD8 9606