Sequence Similarity Clusters for the Entities in PDB 1R4M

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2692
95 % 8 9 2532 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 8 9 2594
70 % 8 9 2632
50 % 8 9 2682
40 % 8 9 2700
30 % 8 9 2641
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6546
95 % 7 8 2673 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 7 8 2729
70 % 7 8 2702
50 % 7 8 2707
40 % 7 8 2723
30 % 7 8 2685
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 2034
95 % 8 11 3368 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 7 10 3845
70 % 14 18 1622
50 % 394 536 11
40 % 394 540 16
30 % 404 556 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TT5 1 A, C amyloid protein-binding protein 1 9606
2 3DBH 1 A, C, E, G NEDD8-activating enzyme E1 regulatory subunit 9606
3 3DBL 1 A, C, E, G NEDD8-activating enzyme E1 regulatory subunit 9606
4 3DBR 1 A, C, E, G NEDD8-activating enzyme E1 regulatory subunit 9606
5 1R4M 1 A, C, E, G amyloid beta precursor protein-binding protein 1 9606
6 1R4N 1 A, C, E, G amyloid beta precursor protein-binding protein 1 9606