Sequence Similarity Clusters for the Entities in PDB 1R1Y

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32877
95 % 55 256 40 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 56 257 44
70 % 69 340 22
50 % 153 735 7
40 % 153 735 7
30 % 167 783 10
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 166 80
95 % 55 257 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 55 261 39
70 % 71 350 18
50 % 154 735 7
40 % 154 735 7
30 % 168 783 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IRD 2 B Hemoglobin beta chain 9606
2 2DN2 2 B, D Hemoglobin beta subunit 9606
3 2DN3 2 B Hemoglobin beta subunit 9606
4 2DN1 2 B Hemoglobin beta subunit 9606
5 1J41 2 B, D, F, H Hemoglobin beta Chain 9606
6 1J40 2 B, D, F, H Hemoglobin beta Chain 9606
7 1BAB 2 B, D HEMOGLOBIN THIONVILLE (DEOXY) (BETA CHAIN) 9606
8 2D5Z 2 B, D Hemoglobin beta subunit 9606
9 1BZ0 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
10 1UIW 2 B, D, F, H Hemoglobin beta chain 9606
11 1J3Y 2 B, D, F, H Hemoglobin beta Chain 9606
12 6HK2 2 B, D Hemoglobin subunit beta 9606
13 3QJD 2 B, D Hemoglobin subunit beta 9606
14 1THB 2 B, D HEMOGLOBIN A (DEOXY) (BETA CHAIN) 9606
15 1BZZ 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
16 5WOG 2 C, D Hemoglobin subunit beta 9606
17 1J3Z 2 B, D, F, H Hemoglobin beta Chain 9606
18 1BZ1 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
19 3NMM 2 B, D Hemoglobin subunit beta 9606
20 5WOH 2 B, D Hemoglobin subunit beta 9606
21 4HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
22 1DXV 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
23 1DXT 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
24 6BWP 2 B, D Hemoglobin subunit beta 9606
25 1SDK 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
26 2HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
27 1QSH 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
28 4ROL 2 B, D Hemoglobin subunit beta 9606
29 1SDL 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
30 1BBB 2 B, D HEMOGLOBIN A (CARBONMONOXY) (BETA CHAIN) 9606
31 1QSI 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
32 1CBM 1 A, B, C, D HEMOGLOBIN BETA 4 (CARBONMONOXY) 9606
33 2D60 2 B, D Hemoglobin beta subunit 9606
34 2W6V 2 B, D HEMOGLOBIN SUBUNIT BETA CHAIN BETA, RESIDUES 2-147 9606
35 1A3N 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
36 3QJB 2 B Hemoglobin subunit beta 9606
37 1A3O 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
38 5KSI 2 B, D Hemoglobin subunit beta 9606
39 3HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
40 1R1Y 2 B, D Hemoglobin beta chain 9606
41 1K0Y 2 B, D hemoglobin beta chain 9606
42 5UCU 2 B Hemoglobin subunit beta 9606
43 1CBL 1 A, B, C, D HEMOGLOBIN BETA 4 (DEOXY) 9606
44 5URC 2 B, D Hemoglobin subunit beta 9606
45 1G9V 2 B, D HEMOGLOBIN BETA CHAIN 9606
46 1CLS 2 B, D HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
47 1VWT 2 B, D HEMOGLOBIN ALPHA AQUOMET, BETA DEOXY 9606
48 1QXE 2 B, D Hemoglobin beta chain beta chain 9606
49 1RQ3 2 B, D Hemoglobin beta chain 9606
50 1XZ2 2 B, D Hemoglobin beta chain 9606
51 4L7Y 2 B, D Hemoglobin subunit beta 9606
52 1XZ7 2 B, D Hemoglobin beta chain 9606
53 3D7O 2 B Hemoglobin subunit beta 9606
54 3IC0 2 B, D Hemoglobin subunit beta 9606
55 1BUW 2 B, D PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
56 1XXT 2 B, D Hemoglobin beta chain 9606
57 1HBB 2 B, D HEMOGLOBIN A (DEOXY) (BETA CHAIN) 9606
58 1KD2 2 B, D Hemoglobin beta chain 9606
59 5E29 2 B, D Hemoglobin subunit beta 9606
60 3WHM 2 B, F Hemoglobin subunit beta 9606
61 6DI4 2 B, D Hemoglobin subunit beta 9606
62 4N8T 2 B Hemoglobin subunit beta 9606
63 4NI1 2 B Hemoglobin subunit beta 9606
64 2HHD 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
65 3OO4 2 B Hemoglobin subunit beta 9606
66 2HBE 2 B HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (BETA CHAIN) 9606
67 1XY0 2 B, D Hemoglobin beta chain 9606
68 4ROM 2 B, D Hemoglobin subunit beta 9606
69 1XZ4 2 B, D Hemoglobin beta chain 9606
70 6BNR 2 B, D Hemoglobin subunit beta 9606
71 4X0L 2 B Hemoglobin subunit beta 9606
72 1YHE 2 B, D Hemoglobin beta chain 9606
73 1XZV 2 B, D Hemoglobin beta chain 9606
74 1Y0D 2 B, D Hemoglobin beta chain 9606
75 1Y85 2 B, D Hemoglobin beta chain RESIDUES 1-145 9606
76 1AJ9 2 B HEMOGLOBIN (BETA CHAIN) 9606
77 2HBC 2 B HEMOGLOBIN A (ETHYL ISOCYANIDE) (BETA CHAIN) 9606
78 6BWU 2 B Hemoglobin subunit beta 9606
79 1XZ5 2 B, D Hemoglobin beta chain 9606
80 3WCP 2 B, D Hemoglobin subunit beta 9606
81 1RPS 2 B, D Hemoglobin beta chain 9606
82 1XZU 2 B, D Hemoglobin beta chain 9606
83 1Y09 2 B, D Hemoglobin beta chain 9606
84 1GZX 2 B, D HEMOGLOBIN BETA CHAIN LIGANDED T STATE 9606
85 2HHE 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
86 2HBD 2 B HEMOGLOBIN A (METHYL ISOCYANIDE) (BETA CHAIN) 9606
87 3P5Q 2 B Hemoglobin subunit beta 9606
88 1DKE 2 B, D HEMOGLOBIN: BETA CHAIN BETA HEME CONTAINS NI+2 ION 9606
89 1HGA 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
90 1HGC 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
91 2HBF 2 B HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (BETA CHAIN) 9606
92 1Y0A 2 B, D Hemoglobin beta chain 9606
93 1YZI 2 B Hemoglobin beta chain 9606
94 3HXN 2 B, D Hemoglobin subunit beta 9606
95 1XYE 2 B, D Hemoglobin beta chain 9606
96 1RQ4 2 B, D Hemoglobin beta chain 9606
97 6HAL 2 B, D Hemoglobin subunit beta 9606
98 5KDQ 2 B, D Hemoglobin subunit beta 9606
99 4M4B 2 B Hemoglobin subunit beta 9606
100 6FQF 1 A, B, C, D Hemoglobin subunit beta 9606
101 1HGB 2 B, D HEMOGLOBIN (AQUO MET) (BETA CHAIN) 9606
102 1Y0C 2 B, D Hemoglobin beta chain 9606
103 4M4A 2 B Hemoglobin subunit beta 9606
104 1YH9 2 B, D Hemoglobin beta chain 9606
105 1MKO 2 B, D Hemoglobin beta chain 9606
106 1LJW 2 B hemoglobin beta chain 9606
107 3ONZ 2 B Hemoglobin subunit beta Hemoglobin Chain B 9606
108 1HHO 2 B HEMOGLOBIN A (OXY) (BETA CHAIN) 9606
109 1BIJ 2 B, D HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
110 1HAB 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
111 1R1X 2 B Hemoglobin beta chain 9606
112 3R5I 2 B, D Hemoglobin subunit beta 9606
113 3OO5 2 B Hemoglobin subunit beta 9606
114 4MQC 2 B Hemoglobin subunit beta 9606
115 4NI0 2 B Hemoglobin subunit beta 9606
116 1RVW 2 B HEMOGLOBIN CARBONMONXY HEMES 9606
117 1B86 2 B, D PROTEIN (HEMOGLOBIN; BETA CHAIN) 2,3-DIPHOSPHOGLYCERATE COMPLEX 9606
118 5EE4 3 D, F Hemoglobin subunit beta 9606
119 1HAC 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
120 6BB5 2 B Hemoglobin subunit beta 9606
121 5HY8 2 B, D, F, H, T Hemoglobin subunit beta 9606
122 1QXD 2 B, D Hemoglobin beta chain beta chain 9606
123 4FC3 2 B Hemoglobin subunit beta 9606
124 3IC2 2 B, D Hemoglobin subunit beta 9606
125 4MQH 2 B Hemoglobin subunit beta 9606
126 1YHR 2 B, D Hemoglobin beta chain 9606
127 5KSJ 2 B, D Hemoglobin subunit beta 9606
128 1LFQ 2 B Hemoglobin beta chain 9606
129 1LFT 2 B Hemoglobin beta chain 9606
130 3B75 2 B, D, F, H, T Hemoglobin subunit beta 9606
131 1LFL 2 B, D, Q, S Hemoglobin beta chain 9606
132 1YDZ 2 B, D Hemoglobin beta chain 9606
133 5X2S 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
134 1NIH 2 B, D HEMOGLOBIN (FERROUS CARBONMONOXY) (BETA CHAIN) 9606
135 5X2U 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
136 1FN3 2 B, D HEMOGLOBIN BETA CHAIN 9606
137 1Y8W 2 B, D Hemoglobin beta chain 9606
138 5HU6 2 B Hemoglobin subunit beta 9606
139 1LFV 2 B Hemoglobin beta chain 9606
140 5X2T 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
141 4N7O 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
142 4XS0 2 B Hemoglobin subunit beta 9606
143 1LFZ 2 B Hemoglobin beta chain 9606
144 4N7N 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
145 1JY7 2 B, D, Q, S, V, X Hemoglobin beta chain 9606
146 5JDO 4 D Hemoglobin subunit beta 9606
147 5JDO 6 F Hemoglobin subunit beta 9606
148 5X2R 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
149 3D17 2 B, D Hemoglobin subunit beta 9606
150 4N7P 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
151 1LFY 2 B Hemoglobin beta chain 9606
152 3SZK 2 B, E Hemoglobin subunit beta 9606
153 4WJG 2 1, B, G, L, Q, V Hemoglobin subunit beta 9606
154 3ODQ 2 B, D Hemoglobin subunit beta 9606
155 5VMM 2 B, D Hemoglobin subunit beta 9606
156 4IJ2 2 B, D Hemoglobin subunit beta 9606
157 6NBC 2 B, D Hemoglobin subunit beta 9606
158 6NBD 2 B, D Hemoglobin subunit beta 9606
159 5NI1 2 B, D Hemoglobin subunit beta 9606
160 2M6Z 2 B, D Hemoglobin subunit beta 9606
161 3KMF 2 C, G Hemoglobin subunit beta 9606
162 2DXM 2 B, D Hemoglobin subunit beta 9606
163 2H35 2 B, D Hemoglobin beta subunit 9606
164 1COH 2 B, D HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN) 9606
165 1HCO 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 9606
166 2HCO 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 9606