Sequence Similarity Clusters for the Entities in PDB 1R0N

Entity #1 | Chains: C
Ecdsyone Response Element dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
Ecdysone Response Element dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2967
95 % 10 11 3388 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.1
PDBFlex
90 % 10 11 3443
70 % 12 14 2876
50 % 14 21 1765
40 % 36 44 748
30 % 36 44 795
Entity #4 | Chains: B
Ecdysone receptor protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 32672
95 % 3 3 29572 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 3 28462
70 % 3 3 25373
50 % 3 3 22591
40 % 3 3 20656
30 % 3 3 18523

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2HAN 4 B Ecdysone receptor Ecdsyone Receptor DNA binding domain 7227
2 1R0O 4 B Ecdysone receptor Ecdsyone Receptor DNA binding domain 7227
3 1R0N 4 B Ecdysone receptor Ecdsyone Receptor DNA binding domain 7227