Sequence Similarity Clusters for the Entities in PDB 1R0N

Entity #1 | Chains: C
Ecdsyone Response Element dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
Ecdysone Response Element dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2957
95 % 10 11 3385 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.1
PDBFlex
90 % 10 11 3453
70 % 12 14 2871
50 % 14 21 1764
40 % 36 44 750
30 % 36 44 790
Entity #4 | Chains: B
Ecdysone receptor protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 36814
95 % 3 3 29536 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 3 28439
70 % 3 3 25719
50 % 3 3 22581
40 % 3 3 20639
30 % 3 3 18493

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6FBQ 1 A, B Retinoic acid receptor RXR-alpha 9606
2 1DSZ 4 B RETINOIC ACID RECEPTOR RXR-ALPHA RESIDUES 129-212 9606
3 4CN5 1 A, B RETINOIC ACID RECEPTOR RXR-ALPHA DNA-BINDING DOMAIN, RESIDUES 126-212 9606
4 4CN2 3 C, D RETINOIC ACID RECEPTOR RXR-ALPHA DNA-BINDING DOMAIN, RESIDUES 130-212 9606
5 6FBR 1 A, B Retinoic acid receptor RXR-alpha 9606
6 4CN7 1 A, B, E, F RETINOIC ACID RECEPTOR RXR-ALPHA DNA-BINDING DOMAIN, RESIDUES 130-212 9606
7 4CN3 1 A, B, C RETINOIC ACID RECEPTOR RXR-ALPHA DNA-BINDING DOMAIN, RESIDUES 130-212 9606
8 4CN3 2 D RETINOIC ACID RECEPTOR RXR-ALPHA DNA-BINDING DOMAIN, RESIDUES 130-212 9606
9 1BY4 3 A, B, C, D PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA) 9606
10 1R0N 3 A Retinoic acid receptor RXR-alpha Retinoid X Receptor DNA binding domain 9606
11 1RXR 1 A RETINOIC ACID RECEPTOR-ALPHA DNA-BINDING DOMAIN, 130-212 9606