Sequence Similarity Clusters for the Entities in PDB 1R0N

Entity #1 | Chains: C
Ecdsyone Response Element dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
Ecdysone Response Element dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2917
95 % 10 11 3317 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.1
PDBFlex
90 % 10 11 3390
70 % 12 14 2849
50 % 14 20 1961
40 % 36 43 775
30 % 36 43 817
Entity #4 | Chains: B
Ecdysone receptor protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 31679
95 % 3 3 27871 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 3 28005
70 % 3 3 24398
50 % 3 3 22267
40 % 3 3 20379
30 % 3 3 18264

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures