Sequence Similarity Clusters for the Entities in PDB 1QP8

Entity #1 | Chains: A,B
FORMATE DEHYDROGENASE protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54277
95 % 1 1 38352 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 36616
70 % 1 1 32580
50 % 1 1 28352
40 % 1 1 25746
30 % 2 2 15620

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3GVX 1 A, B Glycerate dehydrogenase related protein 2303 1.1.1.2 | Details
2 1QP8 1 A, B FORMATE DEHYDROGENASE FULL LENGTH PROTEIN WITH C-TERM HIS TAG (HHHHHH). HIS TAG WAS NOT SEEN IN THE DENSITY. 13773