Sequence Similarity Clusters for the Entities in PDB 1QLR

Entity #1 | Chains: A,C
IGM KAPPA CHAIN V-III (KAU COLD AGGLUTININ) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25429
95 % 74 105 235 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 157 235 78
70 % 1617 2368 2
50 % 2018 3003 2
40 % 2018 3003 2
30 % 4093 6095 1
Entity #2 | Chains: B,D
IGM FAB REGION IV-J(H4)-C (KAU COLD AGGLUTININ) protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37637
95 % 2 2 21319 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 18414
70 % 4 6 9065
50 % 2048 3048 1
40 % 2048 3048 1
30 % 4094 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures