Sequence Similarity Clusters for the Entities in PDB 1QLF

Entity #1 | Chains: A
MHC CLASS I H-2DB HEAVY CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 66 234
95 % 37 70 295 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 38 72 306
70 % 631 835 6
50 % 638 849 7
40 % 678 895 8
30 % 685 920 13
Entity #2 | Chains: B
HUMAN BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 563 732 2
95 % 600 780 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 613 799 4
70 % 805 1103 4
50 % 819 1127 3
40 % 819 1127 4
30 % 819 1127 9
Entity #3 | Chains: C
SYNTHETIC GLYCOPEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures