Sequence Similarity Clusters for the Entities in PDB 1QDM

Entity #1 | Chains: A,B,C
PROPHYTEPSIN protein, length: 478 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32159
95 % 1 1 26952 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.4
PDBFlex
90 % 1 1 26056
70 % 1 1 23694
50 % 1 1 20830
40 % 1 1 19091
30 % 1 1 17083

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures