Sequence Similarity Clusters for the Entities in PDB 1QBV

Entity #1 | Chains: L
THROMBIN (LIGHT CHAIN) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 124 334 53
95 % 126 342 67 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 126 342 71
70 % 126 342 85
50 % 126 342 115
40 % 126 342 138
30 % 126 342 147
Entity #2 | Chains: H
THROMBIN (HEAVY CHAIN) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 332 54
95 % 130 378 55 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 130 385 57
70 % 130 409 48
50 % 130 409 87
40 % 861 1895 4
30 % 865 1909 6
Entity #3 | Chains: E
Hirudin protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures