Sequence Similarity Clusters for the Entities in PDB 1QBV

Entity #1 | Chains: L
THROMBIN (LIGHT CHAIN) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 126 337 58
95 % 128 345 75 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 128 345 79
70 % 128 345 93
50 % 128 345 127
40 % 128 345 147
30 % 128 345 163
Entity #2 | Chains: H
THROMBIN (HEAVY CHAIN) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 122 334 59
95 % 132 381 61 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 132 388 68
70 % 132 412 73
50 % 132 412 99
40 % 879 1933 4
30 % 883 1947 6
Entity #3 | Chains: E
Hirudin protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures