Sequence Similarity Clusters for the Entities in PDB 1QBV

Entity #1 | Chains: L
THROMBIN (LIGHT CHAIN) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 124 335 54
95 % 126 343 69 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 126 343 74
70 % 126 343 89
50 % 126 343 118
40 % 126 343 140
30 % 126 343 151
Entity #2 | Chains: H
THROMBIN (HEAVY CHAIN) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 333 55
95 % 130 379 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 130 386 59
70 % 130 410 52
50 % 130 410 93
40 % 861 1898 4
30 % 865 1912 7
Entity #3 | Chains: E
Hirudin protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures