Sequence Similarity Clusters for the Entities in PDB 1Q1J

Entity #1 | Chains: L,M
Fab 447-52D, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10970
95 % 8 11 2948 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.6
PDBFlex
90 % 71 118 182
70 % 348 579 7
50 % 1838 2886 2
40 % 1838 2886 2
30 % 3727 5855 1
Entity #2 | Chains: H,I
Fab 447-52D, heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 11165
95 % 4 4 11041 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 4 10938
70 % 1771 2784 1
50 % 1866 2927 1
40 % 1866 2927 1
30 % 3728 5855 1
Entity #3 | Chains: P,Q
gp120 V3 peptide protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures