Sequence Similarity Clusters for the Entities in PDB 1PK8

Entity #1 | Chains: A,B,C,D,E,F,G,H
rat synapsin I protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 7660
95 % 1 2 8398 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 8327
70 % 1 2 8085
50 % 1 2 7601
40 % 1 2 7343
30 % 1 2 6895

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures