Sequence Similarity Clusters for the Entities in PDB 1P5U

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4438
95 % 3 10 4572 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.3
PDBFlex
90 % 4 11 3974
70 % 4 11 3987
50 % 4 11 3888
40 % 5 14 2540
30 % 8 27 989
Entity #2 | Chains: B
F1 capsule antigen protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 3569
95 % 3 10 4309 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 3 10 4377
70 % 3 10 4337
50 % 3 10 4235
40 % 3 10 4150
30 % 3 10 4058
Entity #3 | Chains: C
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 3569
95 % 4 10 4309 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 4 10 4377
70 % 4 10 4337
50 % 4 10 4235
40 % 4 10 4150
30 % 4 10 4058

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures