Sequence Similarity Clusters for the Entities in PDB 1O9K

Entity #1 | Chains: A,C,E,G
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17497
95 % 2 2 16436 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 2 2 16195
70 % 2 2 15178
50 % 2 2 13679
40 % 2 2 12749
30 % 2 2 11599
Entity #2 | Chains: B,D,F,H
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18508
95 % 2 2 17262 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 16987
70 % 2 2 14909
50 % 2 2 13451
40 % 2 2 12544
30 % 2 2 11428
Entity #3 | Chains: P,Q,R,S
TRANSCRIPTION FACTOR E2F1 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures