Sequence Similarity Clusters for the Entities in PDB 1O9K

Entity #1 | Chains: A,C,E,G
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17440
95 % 2 2 16383 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 2 2 16124
70 % 2 2 15088
50 % 2 2 13634
40 % 2 2 12688
30 % 2 2 11530
Entity #2 | Chains: B,D,F,H
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17441
95 % 2 2 16384 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 16125
70 % 2 2 15089
50 % 2 2 13635
40 % 2 2 12689
30 % 2 2 11531
Entity #3 | Chains: P,Q,R,S
TRANSCRIPTION FACTOR E2F1 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures