Sequence Similarity Clusters for the Entities in PDB 1O3P

Entity #1 | Chains: A
Urokinase-type plasminogen activator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 2606
95 % 14 20 3394
90 % 14 20 3313
70 % 14 20 3465
50 % 14 20 3272
40 % 14 20 3389
30 % 14 20 3198
Entity #2 | Chains: B
Urokinase-type plasminogen activator protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 4435
95 % 51 130 302 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 51 130 317
70 % 51 137 339
50 % 51 137 401
40 % 51 156 369
30 % 913 1926 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures