Sequence Similarity Clusters for the Entities in PDB 1NY2

Entity #1 | Chains: 1
thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 277 349 53
95 % 223 285 126 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 223 285 130
70 % 216 277 148
50 % 216 277 171
40 % 216 277 183
30 % 216 277 192
Entity #2 | Chains: 2
thrombin Heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 298 98
95 % 286 362 79 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 284 360 84
70 % 298 391 78
50 % 298 391 101
40 % 298 393 121
30 % 1572 1949 6
Entity #3 | Chains: 3
Hirugen protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 4
Inhibitor peptide RPPGF protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures