Sequence Similarity Clusters for the Entities in PDB 1NVV

Entity #1 | Chains: Q
Transforming protein p21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 23 2549
95 % 132 186 207 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.8
PDBFlex
90 % 119 170 228
70 % 239 325 67
50 % 265 369 77
40 % 265 369 93
30 % 378 736 25
Entity #2 | Chains: R
Transforming protein p21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 84 399
95 % 133 186 207 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.8
PDBFlex
90 % 120 170 228
70 % 240 325 67
50 % 266 369 77
40 % 266 369 93
30 % 379 736 25
Entity #3 | Chains: S
Son of sevenless protein homolog 1 protein, length: 481 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 53 864
95 % 28 53 1172 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.3
PDBFlex
90 % 28 53 1207
70 % 28 54 1220
50 % 28 54 1254
40 % 28 54 1305
30 % 28 54 1334

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures