Sequence Similarity Clusters for the Entities in PDB 1NVM

Entity #1 | Chains: A,C,E,G
4-hydroxy-2-oxovalerate aldolase protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27497
95 % 1 1 21686 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 1 21153
70 % 1 1 19403
50 % 3 4 8614
40 % 3 4 8256
30 % 3 4 7731
Entity #2 | Chains: B,D,F,H
acetaldehyde dehydrogenase (acylating) protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22442
95 % 1 1 21452 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 1 1 20927
70 % 1 1 19407
50 % 3 4 8637
40 % 3 4 8257
30 % 3 4 7711

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures