Sequence Similarity Clusters for the Entities in PDB 1NBF

Entity #1 | Chains: A,B,E
Ubiquitin carboxyl-terminal hydrolase 7 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 1692
95 % 15 21 1749 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.2
PDBFlex
90 % 15 21 1790
70 % 15 21 1790
50 % 15 21 1830
40 % 15 21 1874
30 % 15 21 1910
Entity #2 | Chains: C,D
Ubiquitin aldehyde protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 176 383 4
95 % 213 476 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 220 490 7
70 % 244 540 9
50 % 246 555 11
40 % 246 559 14
30 % 252 575 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures