Sequence Similarity Clusters for the Entities in PDB 1N13

Entity #1 | Chains: A,C,E,G,I,K
Pyruvoyl-dependent arginine decarboxylase beta chain protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3401
95 % 1 4 3658 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.5
PDBFlex
90 % 1 4 3727
70 % 1 4 3711
50 % 1 4 3647
40 % 1 4 3618
30 % 1 4 3533
Entity #2 | Chains: B,D,F,H,J,L
Pyruvoyl-dependent arginine decarboxylase alpha chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4804
95 % 1 4 3503 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 4 3571
70 % 1 4 3552
50 % 1 4 3502
40 % 1 4 3487
30 % 1 4 3413

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures