Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78151
95 % 1 1 45048
90 % 2 2 37772
70 % 2 13 5851
50 % 4 26 851
40 % 31 82 790
30 % 73 203 206
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59689
95 % 2 2 33836 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 29684
70 % 4 28 773
50 % 68 201 197
40 % 68 201 213
30 % 73 214 215
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61336
95 % 2 2 33838 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 32434
70 % 4 28 776
50 % 73 213 174
40 % 73 215 188
30 % 73 215 200
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61335
95 % 2 8 9454 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 18 4175
70 % 21 77 763
50 % 60 139 434
40 % 60 139 452
30 % 60 139 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures