Sequence Similarity Clusters for the Entities in PDB 1MLB

Entity #1 | Chains: A
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 19525
95 % 13 32 1627 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 16 42 1220
70 % 578 2418 2
50 % 733 3071 2
40 % 733 3071 2
30 % 1511 6236 1
Entity #2 | Chains: B
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35209
95 % 1 2 28216 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 4 14 3245
70 % 718 2969 1
50 % 766 3121 1
40 % 766 3121 1
30 % 1512 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1MLB 1 A IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) 10090
2 1MLC 1 A, C IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) 10090
3 5KTE 3 L Fab Light Chain 10090
4 6D9W 3 L Fab Light Chain 10090