Sequence Similarity Clusters for the Entities in PDB 1MLB

Entity #1 | Chains: A
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 19441
95 % 13 32 1615 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 16 42 1210
70 % 568 2391 2
50 % 723 3030 2
40 % 723 3030 2
30 % 1491 6153 1
Entity #2 | Chains: B
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34814
95 % 1 2 27813 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 4 14 3240
70 % 708 2928 1
50 % 756 3079 1
40 % 756 3079 1
30 % 1492 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures