1ML0

VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN COMPLEX WITH THE P8A VARIANT OF CC-CHEMOKINE MCP-1


Sequence Similarity Clusters for the Entities in PDB 1ML0

Entity #1 | Chains: A
M3 Protein protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 11693
95 % 4 4 12078 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 4 10891
70 % 4 4 10462
50 % 4 4 9706
40 % 4 4 9232
30 % 4 4 8564
Entity #2 | Chains: D
Small Inducible Cytokine protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65652
95 % 8 11 5340 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 8 11 5129
70 % 8 14 4102
50 % 10 19 3021
40 % 10 21 2760
30 % 10 21 2786

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures