Sequence Similarity Clusters for the Entities in PDB 1MJJ

Entity #1 | Chains: A,L
IMMUNOGLOBULIN MS6-12 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34967
95 % 4 14 3910 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 7 19 2882
70 % 549 2330 2
50 % 698 2959 2
40 % 698 2959 2
30 % 1438 6005 1
Entity #2 | Chains: B,H
IMMUNOGLOBULIN MS6-12 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29601
95 % 2 2 26103 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 7 8949
70 % 685 2860 1
50 % 729 3004 1
40 % 729 3004 1
30 % 1439 6005 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures