Sequence Similarity Clusters for the Entities in PDB 1MEL

Entity #1 | Chains: A,B
VH SINGLE-DOMAIN ANTIBODY protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25305
95 % 3 3 16550 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 6 10102
70 % 353 610 7
50 % 486 877 4
40 % 487 894 5
30 % 704 1317 5
Entity #2 | Chains: L,M
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 719 782 3
95 % 770 834 5 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 785 852 6
70 % 791 859 11
50 % 1011 1086 8
40 % 1040 1116 9
30 % 1043 1121 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures