Sequence Similarity Clusters for the Entities in PDB 1MAB

Entity #1 | Chains: A
PROTEIN (F1-ATPASE ALPHA CHAIN) protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66275
95 % 13 43 305 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 13 43 318
70 % 16 63 177
50 % 16 114 126
40 % 16 114 145
30 % 16 114 150
Entity #2 | Chains: B
PROTEIN (F1-ATPASE BETA CHAIN) protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 51287
95 % 13 42 368 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 13 42 379
70 % 19 85 139
50 % 16 65 205
40 % 16 65 222
30 % 16 65 232
Entity #3 | Chains: G
PROTEIN (F1-ATPASE GAMMA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71430
95 % 1 2 37321 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 35673
70 % 13 44 1335
50 % 13 44 1357
40 % 16 62 796
30 % 17 76 681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures