Sequence Similarity Clusters for the Entities in PDB 1M9X

Entity #1 | Chains: A,B,E,F
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 120 171
95 % 60 139 193 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 60 139 207
70 % 96 199 155
50 % 103 237 134
40 % 103 239 148
30 % 103 239 156
Entity #2 | Chains: C,D,G,H
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29002
95 % 5 46 260 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 6 47 272
70 % 6 47 313
50 % 8 51 355
40 % 8 51 371
30 % 8 51 384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4N1M 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
2 6GS6 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
3 2X25 1 B PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
4 4YUO 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
5 5F66 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
6 6GJL 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
7 3K0M 1 A Cyclophilin A 9606 5.2.1.8 | Details
8 5NOU 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
9 4YUH 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
10 6GJY 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
11 5NOS 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
12 6FK1 1 A Peptidyl-prolyl cis-trans isomerase A 10090 5.2.1.8 | Details
13 5LUD 1 A Peptidyl-prolyl cis-trans isomerase 9606 5.2.1.8 | Details
14 3K0N 1 A Cyclophilin A 9606 5.2.1.8 | Details
15 5WC7 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
16 4YUL 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
17 4YUI 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
18 2X2A 1 A, B PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
19 4YUJ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
20 6GJM 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
21 4DGD 1 A TRIMCyp cyclophilin domain (UNP residues 304-468) 9544 5.2.1.8 | Details
22 6GJJ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
23 4YUM 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
24 5T9Z 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
25 4YUK 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
26 4YUG 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
27 5NOY 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
28 3K0O 1 A Cyclophilin A 9606 5.2.1.8 | Details
29 6BTA 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
30 5NOT 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
31 4N1S 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
32 4YUN 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
33 2WLW 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYPA DOMAIN, RESIDUES 46-210 9544 5.2.1.8 | Details
34 5TA2 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
35 5NOX 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
36 5HSV 1 A, B, C, D Peptidyl-prolyl cis-trans isomerase A Cyclophilin A 9534 5.2.1.8 | Details
37 4N1N 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
38 5TA4 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
39 1W8M 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
40 5NOW 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
41 6GJI 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
42 1YND 1 A, B Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
43 5NOQ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
44 3K0P 1 A Cyclophilin A 9606 5.2.1.8 | Details
45 2CPL 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
46 5KUZ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
47 5NOZ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
48 5KV0 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
49 5KV2 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
50 5KV3 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
51 5KV1 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
52 5KV4 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
53 2X83 2 B, D TRIM5/CypA fusion protein RESIDUES 304-466 9541
54 2CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
55 4IPZ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
56 4N1Q 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
57 5KV5 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
58 6GJN 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
59 5KUQ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
60 1M9X 1 A, B, E, F Cyclophilin A 9606 5.2.1.8 | Details
61 5KV6 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
62 5KUV 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
63 5KUR 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
64 1W8V 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
65 5KUS 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
66 5KUU 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
67 5KUN 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
68 5KUW 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
69 5KV7 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
70 5KUO 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
71 4DGB 1 A TRIMCyp cyclophilin domain (UNP residues 304-468) 9544 5.2.1.8 | Details
72 1M9F 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
73 5KUL 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
74 1M9E 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
75 2XGY 2 B PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
76 5NOR 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
77 1MIK 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
78 1CWL 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
79 1CWK 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
80 4N1O 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
81 6GJR 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
82 4N1R 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
83 1W8L 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
84 1CWJ 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
85 4YUP 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
86 1BCK 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
87 1CWF 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
88 1CWC 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
89 1FGL 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
90 1M9Y 1 A, B, E, F Cyclophilin A 9606 5.2.1.8 | Details
91 1M9D 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
92 5T9W 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
93 1CWH 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
94 6GJP 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
95 3CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
96 2ALF 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
97 1CWM 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
98 4DGA 1 A, B TRIMCyp cyclophilin domain (UNP residues 304-468) 9544 5.2.1.8 | Details
99 4N1P 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
100 2X2D 1 B, C PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
101 1NMK 1 A, B Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
102 1CWA 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
103 2RMA 1 A, C, E, G, I, K, M, O, Q, S PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9606 5.2.1.8 | Details
104 1VBS 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
105 1M9C 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
106 1CWB 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
107 2RMB 1 A, C, E, G, I, K, M, O, Q, S PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9606 5.2.1.8 | Details
108 4CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
109 5NOV 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
110 1AWQ 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
111 3ODI 1 A, C, E, G, I, K, M, O, Q, S Cyclophilin A 9606 5.2.1.8 | Details
112 5CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
113 5T9U 1 A, B, C, D Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
114 4DGE 1 A, B TRIMCyp cyclophilin domain (UNP residues 304-468) 9544 5.2.1.8 | Details
115 3ODL 1 A, C, E, G, I, K, M, O, Q, S Cyclophilin A 9606 5.2.1.8 | Details
116 3RDD 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
117 3K0Q 1 A Cyclophilin A 9606 5.2.1.8 | Details
118 1AWR 1 A, B, C, D, E, F CYCLOPHILIN A 9606 5.2.1.8 | Details
119 1VBT 1 A, B CYCLOPHILIN A 9606 5.2.1.8 | Details
120 3K0R 1 A Cyclophilin A 9606 5.2.1.8 | Details
121 1RMH 1 A, B CYCLOPHILIN A 9606 5.2.1.8 | Details
122 1ZKF 1 A, B Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
123 2X2C 2 K, M, O, Q, S PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
124 4DGC 1 A, B, C, D, E TRIMCyp cyclophilin domain (UNP residues 304-468) 9544 5.2.1.8 | Details
125 1AK4 1 A, B CYCLOPHILIN A 9606 5.2.1.8 | Details
126 1AWS 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
127 1AWU 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
128 1M63 3 C, G PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
129 1MF8 3 C PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
130 1AWV 1 A, B, C, D, E, F CYCLOPHILIN A 9606 5.2.1.8 | Details
131 1AWT 1 A, B, C, D, E, F CYCLOPHILIN A 9606 5.2.1.8 | Details
132 5FJB 2 C PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
133 2N0T 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
134 2MZU 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
135 2MS4 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
136 1CWO 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
137 1CWI 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
138 1OCA 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
139 3CYS 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details