Sequence Similarity Clusters for the Entities in PDB 1M9X

Entity #1 | Chains: A,B,E,F
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 120 171
95 % 60 139 193 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 60 139 207
70 % 96 199 155
50 % 103 237 134
40 % 103 239 148
30 % 103 239 156
Entity #2 | Chains: C,D,G,H
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29002
95 % 5 46 260 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 6 47 272
70 % 6 47 313
50 % 8 51 355
40 % 8 51 371
30 % 8 51 384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4N1M 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
2 4YUO 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
3 5F66 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
4 6GJL 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
5 3K0M 1 A Cyclophilin A 9606 5.2.1.8 | Details
6 5NOU 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
7 4YUH 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
8 6GJY 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
9 5NOS 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
10 5LUD 1 A Peptidyl-prolyl cis-trans isomerase 9606 5.2.1.8 | Details
11 3K0N 1 A Cyclophilin A 9606 5.2.1.8 | Details
12 4YUL 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
13 4YUI 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
14 4YUJ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
15 6GJM 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
16 6GJJ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
17 4YUM 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
18 5T9Z 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
19 4YUK 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
20 4YUG 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
21 5NOY 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
22 5NOT 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
23 4N1S 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
24 4YUN 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
25 5TA2 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
26 5NOX 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
27 5HSV 1 A, B, C, D Peptidyl-prolyl cis-trans isomerase A Cyclophilin A 9534 5.2.1.8 | Details
28 4N1N 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
29 5TA4 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
30 1W8M 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
31 5NOW 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
32 6GJI 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
33 1YND 1 A, B Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
34 5NOQ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
35 2CPL 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
36 5KUZ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
37 5NOZ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
38 5KV0 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
39 5KV2 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
40 5KV3 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
41 5KV1 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
42 5KV4 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
43 2CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
44 4IPZ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
45 4N1Q 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
46 5KV5 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
47 6GJN 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
48 5KUQ 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
49 1M9X 1 A, B, E, F Cyclophilin A 9606 5.2.1.8 | Details
50 5KV6 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
51 5KUV 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
52 5KUR 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
53 1W8V 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
54 5KUS 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
55 5KUU 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
56 5KUN 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
57 5KUW 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
58 5KV7 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
59 5KUO 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
60 1M9F 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
61 5KUL 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
62 1M9E 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
63 2XGY 2 B PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
64 5NOR 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
65 1MIK 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
66 1CWL 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
67 1CWK 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
68 4N1O 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
69 6GJR 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
70 4N1R 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
71 1W8L 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
72 1CWJ 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
73 4YUP 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
74 1BCK 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
75 1CWF 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
76 1CWC 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
77 1FGL 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
78 1M9Y 1 A, B, E, F Cyclophilin A 9606 5.2.1.8 | Details
79 1M9D 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
80 5T9W 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
81 1CWH 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
82 6GJP 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
83 3CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
84 1CWM 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
85 4N1P 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
86 2X2D 1 B, C PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
87 1NMK 1 A, B Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
88 1CWA 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
89 2RMA 1 A, C, E, G, I, K, M, O, Q, S PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9606 5.2.1.8 | Details
90 1VBS 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
91 1M9C 1 A, B Cyclophilin A 9606 5.2.1.8 | Details
92 1CWB 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
93 2RMB 1 A, C, E, G, I, K, M, O, Q, S PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9606 5.2.1.8 | Details
94 4CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
95 5NOV 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
96 1AWQ 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
97 3ODI 1 A, C, E, G, I, K, M, O, Q, S Cyclophilin A 9606 5.2.1.8 | Details
98 5CYH 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
99 5T9U 1 A, B, C, D Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
100 3ODL 1 A, C, E, G, I, K, M, O, Q, S Cyclophilin A 9606 5.2.1.8 | Details
101 1AWR 1 A, B, C, D, E, F CYCLOPHILIN A 9606 5.2.1.8 | Details
102 1VBT 1 A, B CYCLOPHILIN A 9606 5.2.1.8 | Details
103 1RMH 1 A, B CYCLOPHILIN A 9606 5.2.1.8 | Details
104 1ZKF 1 A, B Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
105 2X2C 2 K, M, O, Q, S PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
106 1AK4 1 A, B CYCLOPHILIN A 9606 5.2.1.8 | Details
107 1AWS 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
108 1AWU 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
109 1M63 3 C, G PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
110 1MF8 3 C PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
111 1AWV 1 A, B, C, D, E, F CYCLOPHILIN A 9606 5.2.1.8 | Details
112 1AWT 1 A, B, C, D, E, F CYCLOPHILIN A 9606 5.2.1.8 | Details
113 5FJB 2 C PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
114 2N0T 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
115 2MZU 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
116 2MS4 1 A Peptidyl-prolyl cis-trans isomerase A 9606 5.2.1.8 | Details
117 1CWO 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
118 1CWI 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details
119 1OCA 1 A CYCLOPHILIN A 9606 5.2.1.8 | Details
120 3CYS 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 9606 5.2.1.8 | Details