Sequence Similarity Clusters for the Entities in PDB 1M9X

Entity #1 | Chains: A,B,E,F
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 120 168
95 % 60 139 191 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 60 139 205
70 % 96 199 152
50 % 103 236 133
40 % 103 238 147
30 % 103 238 153
Entity #2 | Chains: C,D,G,H
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27816
95 % 5 46 256 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 6 47 266
70 % 6 47 307
50 % 8 51 350
40 % 8 51 368
30 % 8 51 381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures