Sequence Similarity Clusters for the Entities in PDB 1M9F

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 120 171
95 % 72 139 193 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 72 139 207
70 % 108 199 155
50 % 116 237 134
40 % 116 239 148
30 % 116 239 156
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44580
95 % 6 46 260 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 7 47 272
70 % 7 47 313
50 % 9 51 355
40 % 9 51 371
30 % 9 51 384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WLV 1 A GAG POLYPROTEIN N-TERMINAL DOMAIN, RESIDUES 99-242 11709
2 2WLV 2 B GAG POLYPROTEIN N-TERMINAL DOMAIN, RESIDUES 99-242 11709
3 4NX4 1 C Gag-Pol polyprotein HIV-1 CAPSID (UNP residues 133-278) 11676
4 2XDE 1 A, B GAG POLYPROTEIN N TERMINAL DOMAIN, RESIDUES 1-146 11676
5 2PWO 1 A, B, C, D Gag-Pol polyprotein (Pr160Gag-Pol) N-Terminal Domain 11676
6 2PXR 1 C Gag-Pol polyprotein (Pr160Gag-Pol) N-Terminal Domain 11676
7 2X83 1 A, C HIV-1 CAPSID N-TERMINAL DOMAIN, RESIDUES 401-564 11676
8 1M9X 2 C, D, G, H HIV-1 Capsid N-TERMINAL DOMAIN 11676
9 1M9F 2 C, D HIV-1 Capsid N-terminal domain 11676
10 1M9E 2 C, D HIV-1 Capsid N-terminal domain 11676
11 4J93 1 A Gag protein N-terminal domain,UNP residues 133-278 11676
12 5HGK 1 A, B Capsid protein N-terminal domain, UNP residues 133-278 11676
13 4E91 1 A, B Gag protein N-terminal domain, UNP residues 133-278 11676
14 4B4N 1 A GAG PROTEIN N-TERMINAL DOMAIN, RESIDUES 33-178 11676
15 1M9Y 2 C, D, G, H HIV-1 Capsid N-terminal domain 11676
16 1M9D 2 C, D HIV-1 Capsid N-TERMINAL DOMAIN 11676
17 4E92 1 A, B Gag protein N-terminal domain, UNP residues 133-278 11676
18 4DGA 2 C, D capsid protein cyclophilin-binding domain (UNP residues 133-277) 11676
19 4INB 1 A Gag protein UNP residues 133-278 11676
20 2GON 1 A, B, C, D Capsid protein p24 (CA) N-terminal Domain (residues 133-278) 11676
21 2PWM 1 A, B, C, D, E, F, G, H Gag-Pol polyprotein N-Terminal Domain 11676
22 2X2D 2 D, E CAPSID PROTEIN P24 RESIDUES 133-278 11676
23 4LQW 2 C, D Capsid protein p24 UNP Residues 133-278 11676
24 1M9C 2 C, D HIV-1 Capsid N-terminal domain 11676
25 4DGE 2 C, D capsid protein cyclophilin-binding domain (UNP residues 133-277) 11676
26 2GOL 2 B, D Capsid protein p24 (CA) N-terminal Domain (residues 132-277) 11676
27 1AK4 2 C, D HIV-1 CAPSID N-TERMINAL DOMAIN 11676
28 2X82 1 A, B, C, D CAPSID PROTEIN P24 N-TERMINAL DOMAIN, RESIDUES 136-280 11709
29 4HTW 1 A Gag protein N-terminal domain, UNP residues 3-145 11723
30 6ECN 3 C, F HIV-1 CA 11676
31 1AFV 1 A, B HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN AMINO-TERMINAL DOMAIN RESIDUES 1 - 151 11676
32 5MCZ 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
33 5MD0 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
34 5MD1 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
35 5MD2 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain 11676
36 5MD3 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
37 5MD4 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
38 5MD5 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
39 5MD6 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
40 5MD7 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain, UNP residues 123-269 11676
41 5MD8 2 H, I, J, a, b, f Gag protein 11676
42 5MD9 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain 11676
43 5MDA 2 H, I, J, a, b, f Gag protein 11676
44 5MDB 2 H, I, J, a, b, f Gag protein 11676
45 5MDC 2 H, I, J, a, b, f Gag protein 11676
46 5MDD 2 H, I, J, a, b, f Gag protein 11676
47 5MDE 2 H, I, J, a, b, f Capsid protein p24 N-terminal domain 11676
48 5MDF 2 H, I, J, a, b, f Gag protein 11676
49 5MDG 2 H, I, J, a, b, f Gag protein 11676
50 2JPR 1 A Gag-Pol polyprotein sequence database residues, 133-277 11676
51 1GWP 1 A GAG POLYPROTEIN AMINO-TERMINAL CORE DOMAIN RESIDUES 132 - 282 11676