Sequence Similarity Clusters for the Entities in PDB 1M90

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 44 1137
95 % 25 64 993 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 25 64 1040
70 % 25 64 1057
50 % 25 64 1101
40 % 25 64 1135
30 % 25 64 1171
Entity #11 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 3062
95 % 2 20 3779 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 2 20 3922
70 % 2 21 3768
50 % 26 68 1006
40 % 26 72 978
30 % 26 72 1020
Entity #12 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 594
95 % 26 74 800 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 74 847
70 % 26 74 882
50 % 26 74 913
40 % 26 74 955
30 % 26 75 984
Entity #13 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 44 1121
95 % 26 68 900 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 26 68 921
70 % 26 68 968
50 % 26 70 980
40 % 26 70 1022
30 % 26 70 1061
Entity #14 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 595
95 % 26 74 812 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 26 74 849
70 % 26 74 886
50 % 26 74 917
40 % 26 74 958
30 % 26 74 999
Entity #15 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 3280
95 % 2 20 3926 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 2 20 4001
70 % 26 67 995
50 % 26 70 964
40 % 26 70 1001
30 % 26 70 1041
Entity #16 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 591
95 % 26 74 802 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 26 74 838
70 % 26 74 869
50 % 26 76 879
40 % 26 76 917
30 % 26 76 958
Entity #17 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 68 672
95 % 26 68 896 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 26 68 928
70 % 26 68 975
50 % 26 70 967
40 % 26 70 1004
30 % 26 70 1046
Entity #18 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 3027
95 % 26 68 894 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 26 68 937
70 % 26 68 972
50 % 26 68 1016
40 % 26 70 1008
30 % 26 75 981
Entity #19 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 68 656
95 % 26 68 910 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 68 913
70 % 26 68 982
50 % 26 68 1004
40 % 26 68 1065
30 % 26 68 1086
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 67 677
95 % 26 68 911 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 26 68 942
70 % 26 68 965
50 % 26 68 1007
40 % 26 68 1052
30 % 26 70 1036
Entity #21 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 597
95 % 26 74 797 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 26 74 835
70 % 26 74 868
50 % 26 77 871
40 % 26 79 882
30 % 26 79 926
Entity #22 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 588
95 % 26 74 806 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 74 834
70 % 26 74 876
50 % 26 74 906
40 % 26 74 949
30 % 26 78 932
Entity #23 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 70 646
95 % 25 70 871 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 25 70 898
70 % 25 70 936
50 % 25 70 979
40 % 25 70 1021
30 % 25 70 1060
Entity #24 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 592
95 % 26 74 810 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 26 74 845
70 % 26 74 880
50 % 26 74 912
40 % 26 74 953
30 % 26 74 997
Entity #25 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 68 666
95 % 26 68 884 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 68 914
70 % 26 68 973
50 % 26 68 1005
40 % 26 70 999
30 % 26 70 1038
Entity #26 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 64 717
95 % 25 64 987 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 25 64 1028
70 % 25 64 1052
50 % 25 64 1085
40 % 25 64 1120
30 % 25 64 1154
Entity #27 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 63 731
95 % 25 63 1017 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 25 63 1052
70 % 25 63 1074
50 % 25 63 1116
40 % 25 63 1149
30 % 25 63 1184
Entity #28 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 3206
95 % 2 20 3782 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 2 20 3856
70 % 2 21 3671
50 % 4 30 2514
40 % 4 30 2513
30 % 4 30 2472
Entity #29 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 68 661
95 % 26 68 904 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 68 939
70 % 26 68 979
50 % 26 69 983
40 % 26 69 1024
30 % 26 69 1063
Entity #3 | Chains: 5
CCA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 3168
95 % 26 68 893 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 26 68 925
70 % 26 68 963
50 % 26 68 1010
40 % 26 68 1054
30 % 26 68 1091
Entity #31 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 68 669
95 % 26 68 897 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 26 68 952
70 % 26 68 985
50 % 26 68 1019
40 % 26 70 1020
30 % 26 70 1044
Entity #4 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 2948
95 % 26 68 891 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 26 68 924
70 % 26 68 970
50 % 26 70 968
40 % 26 245 198
30 % 26 245 210
Entity #5 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 67 683
95 % 26 74 804 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 26 74 841
70 % 26 74 865
50 % 26 74 903
40 % 26 76 912
30 % 26 74 990
Entity #6 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 44 1119
95 % 26 74 811 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 26 74 848
70 % 26 74 884
50 % 26 74 915
40 % 26 76 926
30 % 27 78 931
Entity #7 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 74 593
95 % 26 74 809 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 26 74 846
70 % 26 74 863
50 % 26 74 910
40 % 26 76 925
30 % 26 76 966
Entity #8 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 68 660
95 % 26 68 901 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 68 934
70 % 26 68 976
50 % 26 68 1015
40 % 26 70 1007
30 % 26 253 203
Entity #9 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 2910
95 % 2 21 3631 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 26 68 954
70 % 26 68 986
50 % 42 111 413
40 % 42 111 436
30 % 42 111 455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures