Sequence Similarity Clusters for the Entities in PDB 1LPK

Entity #1 | Chains: A
Blood coagulation factor Xa protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 39 1238
95 % 29 40 1613 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 29 40 1641
70 % 29 40 1677
50 % 40 74 860
40 % 40 74 906
30 % 42 79 864
Entity #2 | Chains: B
Blood coagulation factor Xa protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 119 276
95 % 76 136 292 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 76 136 307
70 % 76 137 346
50 % 76 137 415
40 % 186 290 180
30 % 1412 1921 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures