Sequence Similarity Clusters for the Entities in PDB 1LD7

Entity #1 | Chains: A
protein farnesyltransferase alpha subunit protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 4695
95 % 11 14 5570 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 16 56 499
70 % 16 56 528
50 % 16 56 554
40 % 16 56 591
30 % 16 56 612
Entity #2 | Chains: B
protein farnesyltransferase beta subunit protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 6985
95 % 16 56 1085 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 16 56 1113
70 % 16 56 1145
50 % 16 56 1182
40 % 16 56 1226
30 % 16 56 1270

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures