Sequence Similarity Clusters for the Entities in PDB 1L3L

Entity #1 | Chains: E,F,G,H
5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
Transcriptional activator protein traR protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 11827
95 % 1 2 11433 Flexibility: High
Max RMSD: 17.6, Avg RMSD: 10.3
PDBFlex
90 % 1 2 11280
70 % 1 2 10812
50 % 1 2 9973
40 % 1 2 9450
30 % 1 2 8764

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures