Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1260
95 % 13 40 1095 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 956
70 % 13 61 621
50 % 13 61 657
40 % 13 61 683
30 % 13 61 730
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 826
95 % 13 43 981 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1022
70 % 13 60 618
50 % 13 60 655
40 % 13 60 682
30 % 13 60 734
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78226
95 % 10 22 2492 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2355
70 % 10 26 1926
50 % 10 26 1974
40 % 10 26 2007
30 % 10 26 2034
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1377
95 % 13 41 1088 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1017
70 % 13 62 622
50 % 13 62 660
40 % 13 62 688
30 % 13 62 728
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1141
95 % 13 31 1542 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1076
70 % 13 60 606
50 % 19 70 555
40 % 19 70 588
30 % 19 70 613
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1244
95 % 13 36 1242 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1138
70 % 13 53 720
50 % 19 62 646
40 % 19 62 677
30 % 22 72 487
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1824
95 % 13 32 1453 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1222
70 % 13 52 759
50 % 19 61 687
40 % 19 61 711
30 % 19 61 757
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1340
95 % 13 39 1046 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1026
70 % 13 60 603
50 % 13 60 654
40 % 13 60 681
30 % 13 60 724
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1152
95 % 13 39 1053 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1045
70 % 13 46 924
50 % 13 60 667
40 % 13 60 692
30 % 13 60 735
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1929
95 % 13 33 1388 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1423
70 % 13 47 858
50 % 13 47 896
40 % 13 47 932
30 % 13 47 975
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 3033
95 % 10 17 3383 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3054
70 % 10 18 3093
50 % 10 20 2626
40 % 10 20 2656
30 % 10 20 2627

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 7.1.1.8 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 7.1.1.8 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 7.1.1.8 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
14 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 7.1.1.8 | Details
15 6NHG 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
16 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 7.1.1.8 | Details
17 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 7.1.1.8 | Details
18 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
19 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
20 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
21 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
22 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 7.1.1.8 | Details