Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1260
95 % 13 40 1095 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 956
70 % 13 61 621
50 % 13 61 657
40 % 13 61 683
30 % 13 61 730
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 826
95 % 13 43 981 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1022
70 % 13 60 618
50 % 13 60 655
40 % 13 60 682
30 % 13 60 734
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78226
95 % 10 22 2492 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2355
70 % 10 26 1926
50 % 10 26 1974
40 % 10 26 2007
30 % 10 26 2034
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1377
95 % 13 41 1088 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1017
70 % 13 62 622
50 % 13 62 660
40 % 13 62 688
30 % 13 62 728
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1141
95 % 13 31 1542 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1076
70 % 13 60 606
50 % 19 70 555
40 % 19 70 588
30 % 19 70 613
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1244
95 % 13 36 1242 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1138
70 % 13 53 720
50 % 19 62 646
40 % 19 62 677
30 % 22 72 487
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1824
95 % 13 32 1453 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1222
70 % 13 52 759
50 % 19 61 687
40 % 19 61 711
30 % 19 61 757
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1340
95 % 13 39 1046 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1026
70 % 13 60 603
50 % 13 60 654
40 % 13 60 681
30 % 13 60 724
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1152
95 % 13 39 1053 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1045
70 % 13 46 924
50 % 13 60 667
40 % 13 60 692
30 % 13 60 735
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1929
95 % 13 33 1388 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1423
70 % 13 47 858
50 % 13 47 896
40 % 13 47 932
30 % 13 47 975
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 3033
95 % 10 17 3383 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3054
70 % 10 18 3093
50 % 10 20 2626
40 % 10 20 2656
30 % 10 20 2627

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 6 F, S Ubiquinol-cytochrome c reductase complex 14 kDa protein 9913 7.1.1.8 | Details
2 1PPJ 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
3 1PP9 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
4 2FYU 6 F Hypothetical protein LOC616871 subunit 6 9913
5 1NTM 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
6 1L0L 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
7 1NTK 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
8 1SQX 8 F Ubiquinol-cytochrome C reductase complex 11 kDa protein subunit 8 9913 7.1.1.8 | Details
9 5KLV 6 F Cytochrome b-c1 complex subunit 7 9913
10 1NTZ 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
11 1SQV 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
12 1SQB 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
13 1L0N 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
14 5OKD 6 F Cytochrome b-c1 complex subunit 7 9913
15 3TGU 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 7.1.1.8 | Details
16 3L75 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
17 1SQP 6 F sub6 subunit 6 9913
18 6NHG 6 F Cytochrome b-c1 complex subunit 7 9913
19 3L71 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 7.1.1.8 | Details
20 3L74 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
21 1SQQ 6 F Ubiquinol-cytochrome c reductase complex 14 kDa protein subunit 6 9913 7.1.1.8 | Details
22 3L70 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 7.1.1.8 | Details
23 1NU1 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
24 3H1J 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
25 6HAW 6 F Cytochrome b-c1 complex subunit 7 9913
26 1BE3 6 F CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
27 4U3F 6 F, S Cytochrome b-c1 complex subunit 7 9031
28 4D6T 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
29 1QCR 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
30 3L73 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
31 3H1H 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 7.1.1.8 | Details
32 3L72 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
33 3H1K 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
34 1BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
35 3H1L 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
36 5NMI 6 F, S Cytochrome b-c1 complex subunit 7 9913
37 3H1I 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 7.1.1.8 | Details
38 4D6U 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
39 1BGY 6 F, R CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
40 2BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
41 3CWB 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031
42 3BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
43 6QC2 34 d1, d2 UQCRB 9940
44 6QC3 6 d1, d2 UQCRB 9940
45 6QC4 6 d1, d2 UQCRB 9940
46 6QBX 6 d1, d2 Cytochrome b-c1 complex subunit 7 9940
47 6Q9E 6 d1, d2 Cytochrome b-c1 complex subunit 7 9940
48 6FO6 6 F, S Cytochrome b-c1 complex subunit 7 9913
49 6FO0 6 F, S Cytochrome b-c1 complex subunit 7 9913
50 6FO2 6 F, S Cytochrome b-c1 complex subunit 7 9913
51 5XTE 6 F, S Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
52 5XTH 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
53 5XTI 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
54 5LUF 6 f, r Cytochrome b-c1 complex subunit 7 9913
55 5GUP 49 9, y Cytochrome b-c1 complex subunit 7 9823
56 5GPN 6 F, R Cytochrome b-c1 complex subunit 7 9913
57 5J8K 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
58 5J7Y 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
59 5J4Z 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
60 2YBB 14 F, f CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913 7.1.1.8 | Details