Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1287
95 % 13 40 1084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 955
70 % 13 61 622
50 % 13 61 664
40 % 13 61 695
30 % 13 61 729
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 834
95 % 13 43 973 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1015
70 % 13 60 618
50 % 13 60 663
40 % 13 60 690
30 % 13 60 727
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82214
95 % 10 22 2447 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2307
70 % 10 26 1889
50 % 10 26 1932
40 % 10 26 1969
30 % 10 26 2000
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1401
95 % 13 41 1085 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1017
70 % 13 62 606
50 % 13 62 667
40 % 13 62 686
30 % 13 62 724
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1127
95 % 13 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1075
70 % 13 60 625
50 % 19 70 554
40 % 19 70 591
30 % 19 70 616
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1243
95 % 13 36 1245 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1139
70 % 13 53 718
50 % 19 62 650
40 % 19 62 681
30 % 22 72 485
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1847
95 % 13 32 1450 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1226
70 % 13 52 761
50 % 19 61 682
40 % 19 61 711
30 % 19 61 748
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 27 1313
95 % 13 39 1044 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1034
70 % 13 60 620
50 % 13 60 653
40 % 13 60 688
30 % 13 60 725
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1165
95 % 13 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1039
70 % 13 46 925
50 % 13 60 662
40 % 13 60 689
30 % 13 60 726
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1912
95 % 13 33 1415 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1450
70 % 13 47 857
50 % 13 47 889
40 % 13 47 928
30 % 13 47 968
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 2983
95 % 10 17 3309 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3000
70 % 10 18 3026
50 % 10 20 2586
40 % 10 20 2604
30 % 10 20 2610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 5 E, R Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial 9913 7.1.1.8 | Details
2 1PPJ 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 7.1.1.8 | Details
3 1PP9 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 7.1.1.8 | Details
4 2FYU 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial Iron-sulfur protein 9913 7.1.1.8 | Details
5 1NTM 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 7.1.1.8 | Details
6 1L0L 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 7.1.1.8 | Details
7 1NTK 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, MITOCHONDRIAL 9913 7.1.1.8 | Details
8 1SQX 4 E Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913 7.1.1.8 | Details
9 5KLV 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
10 1NTZ 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 7.1.1.8 | Details
11 1SQV 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 7.1.1.8 | Details
12 1SQB 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 7.1.1.8 | Details
13 1L0N 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 7.1.1.8 | Details
14 5OKD 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
15 1SQP 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 7.1.1.8 | Details
16 6NHG 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
17 1SQQ 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 7.1.1.8 | Details
18 1NU1 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 7.1.1.8 | Details
19 6HAW 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
20 1BE3 5 E CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
21 1QCR 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
22 1BCC 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
23 1BGY 5 E, Q CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
24 2BCC 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
25 3BCC 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
26 6QC2 33 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
27 6QC3 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
28 6QC4 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
29 6QBX 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
30 6Q9E 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
31 5XTE 3 C, P Cytochrome b-c1 complex subunit Rieske, mitochondrial 9606 7.1.1.8 | Details
32 5XTH 60 AC, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9606 7.1.1.8 | Details
33 5XTI 60 AC, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9606 7.1.1.8 | Details
34 5LUF 5 e, q Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
35 5J8K 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
36 5J7Y 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
37 5J4Z 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
38 2YBB 13 E, e CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 7.1.1.8 | Details