Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1259
95 % 13 40 1088 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 956
70 % 13 61 624
50 % 13 61 663
40 % 13 61 691
30 % 13 61 734
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 829
95 % 13 43 978 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1021
70 % 13 60 606
50 % 13 60 653
40 % 13 60 680
30 % 13 60 724
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78144
95 % 10 22 2486 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2337
70 % 10 26 1919
50 % 10 26 1970
40 % 10 26 2003
30 % 10 26 2037
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1392
95 % 13 41 1089 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1011
70 % 13 62 625
50 % 13 62 661
40 % 13 62 689
30 % 13 62 732
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1106
95 % 13 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1064
70 % 13 60 622
50 % 19 70 555
40 % 19 70 594
30 % 19 70 619
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1285
95 % 13 36 1244 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1140
70 % 13 53 726
50 % 19 62 651
40 % 19 62 678
30 % 22 72 489
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1822
95 % 13 32 1473 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1230
70 % 13 52 774
50 % 19 61 687
40 % 19 61 715
30 % 19 61 762
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1367
95 % 13 39 1047 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1043
70 % 13 60 614
50 % 13 60 658
40 % 13 60 686
30 % 13 60 730
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1149
95 % 13 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1044
70 % 13 46 929
50 % 13 60 664
40 % 13 60 692
30 % 13 60 735
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1941
95 % 13 33 1418 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1450
70 % 13 47 860
50 % 13 47 890
40 % 13 47 926
30 % 13 47 973
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 3043
95 % 10 17 3323 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3003
70 % 10 18 3050
50 % 10 20 2626
40 % 10 20 2641
30 % 10 20 2625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 5 E, R Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial 9913 7.1.1.8 | Details
2 1PPJ 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 7.1.1.8 | Details
3 1PP9 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 7.1.1.8 | Details
4 2FYU 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial Iron-sulfur protein 9913 7.1.1.8 | Details
5 1NTM 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 7.1.1.8 | Details
6 1L0L 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 7.1.1.8 | Details
7 1NTK 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, MITOCHONDRIAL 9913 7.1.1.8 | Details
8 1SQX 4 E Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913 7.1.1.8 | Details
9 5KLV 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
10 1NTZ 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 7.1.1.8 | Details
11 1SQV 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 7.1.1.8 | Details
12 1SQB 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 7.1.1.8 | Details
13 1L0N 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 7.1.1.8 | Details
14 5OKD 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
15 3TGU 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial UNP RESIDUES 77-272 9031 7.1.1.8 | Details
16 3L75 5 E, R CYTOCHROME B-C1 COMPLEX SUBUNIT 5, RIESKE IRONSULFUR PROTEIN, MITOCHONDRIAL UNP RESIDUES 77-272 9031 7.1.1.8 | Details
17 1SQP 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 7.1.1.8 | Details
18 6NHG 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
19 3L71 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial UNP RESIDUES 77-272 9031 7.1.1.8 | Details
20 3L74 5 E, R CYTOCHROME B-C1 COMPLEX SUBUNIT 5, RIESKE IRONSULFUR PROTEIN, MITOCHONDRIAL UNP RESIDUES 77-272 9031 7.1.1.8 | Details
21 1SQQ 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 7.1.1.8 | Details
22 3L70 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial UNP RESIDUES 77-272 9031 7.1.1.8 | Details
23 1NU1 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 7.1.1.8 | Details
24 3H1J 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial sequence database residues 77-272 9031 7.1.1.8 | Details
25 6HAW 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
26 1BE3 5 E CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
27 4U3F 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial UNP RESIDUES 77-272 9031 7.1.1.8 | Details
28 1QCR 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
29 3L73 5 E, R CYTOCHROME B-C1 COMPLEX SUBUNIT 5, RIESKE IRONSULFUR PROTEIN, MITOCHONDRIAL UNP RESIDUES 77-272 9031 7.1.1.8 | Details
30 3H1H 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial sequence database residues 77-272 9031 7.1.1.8 | Details
31 3L72 5 E, R CYTOCHROME B-C1 COMPLEX SUBUNIT 5, RIESKE IRONSULFUR PROTEIN, MITOCHONDRIAL UNP RESIDUES 77-272 9031 7.1.1.8 | Details
32 3H1K 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial sequence database residues 77-272 9031 7.1.1.8 | Details
33 1BCC 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
34 3H1L 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial sequence database residues 77-272 9031 7.1.1.8 | Details
35 3H1I 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial sequence database residues 77-272 9031 7.1.1.8 | Details
36 1BGY 5 E, Q CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
37 2BCC 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
38 3CWB 5 E, R MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR PROTEIN 9031 7.1.1.8 | Details
39 3BCC 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
40 6QC2 33 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
41 6QC3 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
42 6QC4 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
43 6QBX 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
44 6Q9E 5 f1, f2 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
45 5XTE 3 C, P Cytochrome b-c1 complex subunit Rieske, mitochondrial 9606 7.1.1.8 | Details
46 5XTH 60 AC, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9606 7.1.1.8 | Details
47 5XTI 60 AC, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9606 7.1.1.8 | Details
48 5LUF 5 e, q Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
49 5J8K 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
50 5J7Y 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
51 5J4Z 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 7.1.1.8 | Details
52 2YBB 13 E, e CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 7.1.1.8 | Details