Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1259
95 % 13 40 1088 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 956
70 % 13 61 624
50 % 13 61 663
40 % 13 61 691
30 % 13 61 734
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 829
95 % 13 43 978 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1021
70 % 13 60 606
50 % 13 60 653
40 % 13 60 680
30 % 13 60 724
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78144
95 % 10 22 2486 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2337
70 % 10 26 1919
50 % 10 26 1970
40 % 10 26 2003
30 % 10 26 2037
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1392
95 % 13 41 1089 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1011
70 % 13 62 625
50 % 13 62 661
40 % 13 62 689
30 % 13 62 732
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1106
95 % 13 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1064
70 % 13 60 622
50 % 19 70 555
40 % 19 70 594
30 % 19 70 619
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1285
95 % 13 36 1244 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1140
70 % 13 53 726
50 % 19 62 651
40 % 19 62 678
30 % 22 72 489
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1822
95 % 13 32 1473 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1230
70 % 13 52 774
50 % 19 61 687
40 % 19 61 715
30 % 19 61 762
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1367
95 % 13 39 1047 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1043
70 % 13 60 614
50 % 13 60 658
40 % 13 60 686
30 % 13 60 730
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1149
95 % 13 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1044
70 % 13 46 929
50 % 13 60 664
40 % 13 60 692
30 % 13 60 735
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1941
95 % 13 33 1418 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1450
70 % 13 47 860
50 % 13 47 890
40 % 13 47 926
30 % 13 47 973
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 3043
95 % 10 17 3323 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3003
70 % 10 18 3050
50 % 10 20 2626
40 % 10 20 2641
30 % 10 20 2625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
2 1PPJ 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
3 1PP9 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
4 2FYU 4 D Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913
5 1NTM 4 D cytochrome c1 9913
6 1L0L 4 D Cytochrome c1, heme protein 9913
7 1NTK 4 D cytochrome c1 9913
8 1SQX 5 D Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913
9 5KLV 4 D Cytochrome c1, heme protein, mitochondrial 9913
10 1NTZ 4 D cytochrome c1 9913
11 1SQV 4 D Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
12 1SQB 4 D Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
13 1L0N 4 D Cytochrome c1, heme protein 9913
14 1SQP 4 D Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913
15 6NHG 4 D Cytochrome c1, heme protein, mitochondrial 9913
16 1SQQ 4 D Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913
17 1NU1 4 D cytochrome c1 9913
18 6HAW 4 D Cytochrome c1, heme protein, mitochondrial 9913
19 1BE3 4 D CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
20 4D6T 4 D, Q CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL 9913
21 1BCC 4 D UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
22 5NMI 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913
23 1BGY 4 D, P CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
24 2BCC 4 D UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
25 3BCC 4 D UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
26 6QC2 32 c1, c2 Cytochrome c1 9940
27 6QC3 4 c1, c2 Cytochrome c1 9940
28 6QC4 4 c1, c2 Cytochrome c1 9940
29 6QBX 4 c1, c2 Cytochrome c1 9940
30 6Q9E 4 c1, c2 Cytochrome c1 9940
31 5XTE 8 H, U Cytochrome c1, heme protein, mitochondrial 9606
32 5XTH 65 AH, AU Cytochrome c1, heme protein, mitochondrial 9606
33 5XTI 65 AH, AU Cytochrome c1, heme protein, mitochondrial 9606
34 5LUF 4 d, p Cytochrome c1, heme protein, mitochondrial 9913
35 5GPN 4 D, P Cytochrome c1, heme protein, mitochondrial 9913
36 5J8K 54 AD, AO COMPLEX III SUBUNIT 4 / CYTOCHROME C1 9940
37 5J7Y 54 AD, AO COMPLEX III SUBUNIT 4 / CYTOCHROME C1 9940
38 5J4Z 54 AD, AO COMPLEX III SUBUNIT 4 / CYTOCHROME C1 9940
39 2YBB 12 D, d CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL RESIDUES 85-325 9913 7.1.1.8 | Details