Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1287
95 % 13 40 1084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 955
70 % 13 61 622
50 % 13 61 664
40 % 13 61 695
30 % 13 61 729
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 834
95 % 13 43 973 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1015
70 % 13 60 618
50 % 13 60 663
40 % 13 60 690
30 % 13 60 727
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82214
95 % 10 22 2447 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2307
70 % 10 26 1889
50 % 10 26 1932
40 % 10 26 1969
30 % 10 26 2000
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1401
95 % 13 41 1085 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1017
70 % 13 62 606
50 % 13 62 667
40 % 13 62 686
30 % 13 62 724
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1127
95 % 13 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1075
70 % 13 60 625
50 % 19 70 554
40 % 19 70 591
30 % 19 70 616
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1243
95 % 13 36 1245 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1139
70 % 13 53 718
50 % 19 62 650
40 % 19 62 681
30 % 22 72 485
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1847
95 % 13 32 1450 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1226
70 % 13 52 761
50 % 19 61 682
40 % 19 61 711
30 % 19 61 748
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 27 1313
95 % 13 39 1044 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1034
70 % 13 60 620
50 % 13 60 653
40 % 13 60 688
30 % 13 60 725
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1165
95 % 13 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1039
70 % 13 46 925
50 % 13 60 662
40 % 13 60 689
30 % 13 60 726
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1912
95 % 13 33 1415 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1450
70 % 13 47 857
50 % 13 47 889
40 % 13 47 928
30 % 13 47 968
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 2983
95 % 10 17 3309 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3000
70 % 10 18 3026
50 % 10 20 2586
40 % 10 20 2604
30 % 10 20 2610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3CX5 3 C, N CYTOCHROME B 559292 7.1.1.8 | Details
2 2A06 3 C, P Cytochrome b, heme protein, mitochondrial 9913 7.1.1.8 | Details
3 1PPJ 3 C, P Cytochrome b 9913 7.1.1.8 | Details
4 1PP9 3 C, P Cytochrome b 9913 7.1.1.8 | Details
5 1KB9 3 C CYTOCHROME B 4932
6 2IBZ 3 C Cytochrome b 4932 7.1.1.8 | Details
7 2FYU 3 C Cytochrome b cytochrome b 9913
8 1EZV 3 C CYTOCHROME B 4932
9 1NTM 3 C Cytochrome b 9913
10 3CXH 3 C, N Cytochrome b 559292 7.1.1.8 | Details
11 1P84 3 C cytochrome b 4932 7.1.1.8 | Details
12 1L0L 3 C Cytochrome B 9913
13 1NTK 3 C Cytochrome b 9913
14 1SQX 3 C Cytochrome b cytochrome b 9913
15 5KLV 3 C Cytochrome b 9913
16 1NTZ 3 C Cytochrome b 9913
17 1SQV 3 C Cytochrome b 9913 7.1.1.8 | Details
18 1SQB 3 C Cytochrome b 9913 7.1.1.8 | Details
19 1L0N 3 C Cytochrome B 9913
20 5OKD 3 C Cytochrome b 9913
21 3TGU 3 C, P Cytochrome b 9031
22 3L75 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
23 1KYO 3 C, N CYTOCHROME B 4932
24 1SQP 3 C Cytochrome b cytochrome b 9913
25 6NHG 3 C Cytochrome b 9913
26 3L71 3 C, P Cytochrome b 9031 7.1.1.8 | Details
27 3L74 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
28 1SQQ 3 C Cytochrome b cytochrome b 9913
29 3L70 3 C, P Cytochrome b 9031 7.1.1.8 | Details
30 1NU1 3 C Cytochrome b 9913
31 3H1J 3 C, P Cytochrome b 9031 7.1.1.8 | Details
32 6HAW 3 C Cytochrome b 9913
33 1BE3 3 C CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
34 4U3F 3 C, P Cytochrome b 9031
35 4D6T 3 C, P CYTOCHROME B 9913
36 1QCR 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
37 3L73 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
38 3H1H 3 C, P Cytochrome b 9031 7.1.1.8 | Details
39 3L72 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
40 4PD4 3 C Cytochrome b 4932
41 3H1K 3 C, P Cytochrome b 9031 7.1.1.8 | Details
42 1BCC 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
43 3H1L 3 C, P Cytochrome b 9031 7.1.1.8 | Details
44 5NMI 3 C, P Cytochrome b 9913
45 3H1I 3 C, P Cytochrome b 9031 7.1.1.8 | Details
46 4D6U 3 C, P CYTOCHROME B 9913
47 1BGY 3 C, O CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
48 2BCC 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
49 3CWB 3 C, P Cytochrome b 9031
50 3BCC 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
51 6QC2 31 b1, b2 Cytochrome b 9940
52 6QC3 3 b1, b2 Cytochrome b 9940
53 6QC4 3 b1, b2 Cytochrome b 9940
54 6QBX 3 b1, b2 Cytochrome b 9940
55 6Q9E 3 b1, b2 Cytochrome b 9940
56 6HU9 3 C, N Cytochrome b 4932
57 6GIQ 3 C, N Cytochrome b 4932
58 6FO6 4 C, P Cytochrome b 9913
59 6FO0 3 C, P Cytochrome b 9913
60 6FO2 3 C, P Cytochrome b 9913
61 5XTE 9 J, V Cytochrome b 9606
62 5XTH 66 AJ, AV Cytochrome b UNP RESIDUES 1-379 9606
63 5XTI 66 AJ, AV Cytochrome b UNP RESIDUES 2-479 9606
64 5LUF 3 b, o Cytochrome b 9913
65 5GUP 47 7, w Cytochrome b 9823
66 5GPN 3 C, O Cytochrome b 9913
67 5J8K 53 AC, AN Cytochrome b 9940
68 5J7Y 53 AC, AN Cytochrome b 9940
69 5J4Z 53 AC, AN Cytochrome b 9940
70 2YBB 11 C, c CYTOCHROME B 9913 7.1.1.8 | Details