Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1259
95 % 13 40 1088 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 956
70 % 13 61 624
50 % 13 61 663
40 % 13 61 691
30 % 13 61 734
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 829
95 % 13 43 978 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1021
70 % 13 60 606
50 % 13 60 653
40 % 13 60 680
30 % 13 60 724
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78144
95 % 10 22 2486 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2337
70 % 10 26 1919
50 % 10 26 1970
40 % 10 26 2003
30 % 10 26 2037
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1392
95 % 13 41 1089 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1011
70 % 13 62 625
50 % 13 62 661
40 % 13 62 689
30 % 13 62 732
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1106
95 % 13 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1064
70 % 13 60 622
50 % 19 70 555
40 % 19 70 594
30 % 19 70 619
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1285
95 % 13 36 1244 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1140
70 % 13 53 726
50 % 19 62 651
40 % 19 62 678
30 % 22 72 489
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1822
95 % 13 32 1473 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1230
70 % 13 52 774
50 % 19 61 687
40 % 19 61 715
30 % 19 61 762
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1367
95 % 13 39 1047 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1043
70 % 13 60 614
50 % 13 60 658
40 % 13 60 686
30 % 13 60 730
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1149
95 % 13 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1044
70 % 13 46 929
50 % 13 60 664
40 % 13 60 692
30 % 13 60 735
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1941
95 % 13 33 1418 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1450
70 % 13 47 860
50 % 13 47 890
40 % 13 47 926
30 % 13 47 973
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 3043
95 % 10 17 3323 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3003
70 % 10 18 3050
50 % 10 20 2626
40 % 10 20 2641
30 % 10 20 2625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 2 B, O Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
2 1PPJ 2 B, O Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
3 1PP9 2 B, O Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
4 2FYU 2 B Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial Core2 9913 7.1.1.8 | Details
5 1NTM 2 B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
6 1L0L 2 B UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 9913 7.1.1.8 | Details
7 1NTK 2 B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
8 1SQX 2 B Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor core protein 2 9913 7.1.1.8 | Details
9 5KLV 2 B Cytochrome b-c1 complex subunit 2, mitochondrial 9913
10 1NTZ 2 B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
11 1SQV 2 B Ubiquinol-cytochrome c reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
12 1SQB 2 B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
13 1L0N 2 B UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 9913 7.1.1.8 | Details
14 5OKD 2 B Cytochrome b-c1 complex subunit 2, mitochondrial 9913
15 1SQP 2 B Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor core protein 2 9913 7.1.1.8 | Details
16 6NHG 2 B Cytochrome b-c1 complex subunit 2, mitochondrial 9913
17 1SQQ 2 B Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor core protein 2 9913 7.1.1.8 | Details
18 1NU1 2 B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial 9913 7.1.1.8 | Details
19 6HAW 2 B Cytochrome b-c1 complex subunit 2, mitochondrial 9913
20 1BE3 2 B CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
21 4D6T 10 O CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL 9913
22 4D6T 2 B CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL 9913
23 1QCR 2 B UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
24 1BCC 2 B UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
25 5NMI 2 B, O Cytochrome b-c1 complex subunit 2, mitochondrial 9913
26 4D6U 11 O CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL 9913
27 4D6U 2 B CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL 9913
28 1BGY 2 B, N CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
29 2BCC 2 B UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
30 3BCC 2 B UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
31 6QC2 30 a2, a4 Ubiquinol-cytochrome c reductase core protein 2 9940
32 6QC3 2 a2, a4 Ubiquinol-cytochrome c reductase core protein 2 9940
33 6QC4 2 a2, a4 Ubiquinol-cytochrome c reductase core protein 2 9940
34 6QBX 2 a2, a4 Ubiquinol-cytochrome c reductase core protein 2 9940
35 6Q9E 2 a2, a4 Ubiquinol-cytochrome c reductase core protein 2 9940
36 6FO6 3 B, O Cytochrome b-c1 complex subunit 2, mitochondrial 9913
37 6FO0 2 B, O Cytochrome b-c1 complex subunit 2, mitochondrial 9913
38 6FO2 2 B, O Cytochrome b-c1 complex subunit 2, mitochondrial 9913
39 5LUF 2 m, n Cytochrome b-c1 complex subunit 2, mitochondrial 9913
40 5GUP 46 6, v Cytochrome b-c1 complex subunit 2, mitochondrial 9823
41 5GPN 2 B, N Cytochrome b-c1 complex subunit 2, mitochondrial 9913
42 5J8K 52 AB, AM COMPLEX III SUBUNIT 2 / CORE 2 9940
43 5J7Y 52 AB, AM COMPLEX III SUBUNIT 2 / CORE 2 9940
44 5J4Z 52 AB, AM COMPLEX III SUBUNIT 2 / CORE 2 9940
45 2YBB 10 B, b CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL 9913 7.1.1.8 | Details