Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1287
95 % 13 40 1084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 955
70 % 13 61 622
50 % 13 61 664
40 % 13 61 695
30 % 13 61 729
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 834
95 % 13 43 973 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 1015
70 % 13 60 618
50 % 13 60 663
40 % 13 60 690
30 % 13 60 727
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82214
95 % 10 22 2447 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2307
70 % 10 26 1889
50 % 10 26 1932
40 % 10 26 1969
30 % 10 26 2000
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1401
95 % 13 41 1085 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1017
70 % 13 62 606
50 % 13 62 667
40 % 13 62 686
30 % 13 62 724
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1127
95 % 13 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1075
70 % 13 60 625
50 % 19 70 554
40 % 19 70 591
30 % 19 70 616
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1243
95 % 13 36 1245 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1139
70 % 13 53 718
50 % 19 62 650
40 % 19 62 681
30 % 22 72 485
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1847
95 % 13 32 1450 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1226
70 % 13 52 761
50 % 19 61 682
40 % 19 61 711
30 % 19 61 748
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 27 1313
95 % 13 39 1044 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1034
70 % 13 60 620
50 % 13 60 653
40 % 13 60 688
30 % 13 60 725
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1165
95 % 13 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1039
70 % 13 46 925
50 % 13 60 662
40 % 13 60 689
30 % 13 60 726
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1912
95 % 13 33 1415 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1450
70 % 13 47 857
50 % 13 47 889
40 % 13 47 928
30 % 13 47 968
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 2983
95 % 10 17 3309 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 3000
70 % 10 18 3026
50 % 10 20 2586
40 % 10 20 2604
30 % 10 20 2610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 10 J, W Ubiquinol-cytochrome c reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
2 1PPJ 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
3 1PP9 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
4 2FYU 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 7.1.1.8 | Details
5 1NTM 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
6 1L0L 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
7 1NTK 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
8 1SQX 11 J Ubiquinol-cytochrome C reductase complex 6.4 kDa protein subunit 11 9913 7.1.1.8 | Details
9 5KLV 10 J Cytochrome b-c1 complex subunit 9 9913
10 1NTZ 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
11 1SQV 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
12 1SQB 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
13 1L0N 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
14 5OKD 10 J Cytochrome b-c1 complex subunit 9 9913
15 1SQP 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 7.1.1.8 | Details
16 6NHG 10 J Cytochrome b-c1 complex subunit 9 9913
17 1SQQ 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 7.1.1.8 | Details
18 1NU1 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 7.1.1.8 | Details
19 6HAW 10 J Cytochrome b-c1 complex subunit 9 9913
20 1BE3 10 J CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
21 4D6T 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
22 1QCR 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
23 1BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
24 5NMI 9 J, W Cytochrome b-c1 complex subunit 9 9913
25 4D6U 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
26 1BGY 10 J, V CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
27 2BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
28 3BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031
29 6QC2 38 i1, i2 Ubiquinol-cytochrome c reductase, complex III subunit X 9940
30 6QC3 10 i1, i2 Ubiquinol-cytochrome c reductase, complex III subunit X 9940
31 6QC4 10 i1, i2 Ubiquinol-cytochrome c reductase, complex III subunit X 9940
32 6QBX 10 i1, i2 Ubiquinol-cytochrome c reductase, complex III subunit X 9940
33 6Q9E 10 i1, i2 Ubiquinol-cytochrome c reductase, complex III subunit X 9940
34 6FO6 9 J, W Cytochrome b-c1 complex subunit 9 9913
35 6FO0 10 J, W Cytochrome b-c1 complex subunit 9 9913
36 6FO2 10 J, W Cytochrome b-c1 complex subunit 9 9913
37 5LUF 10 j, v Cytochrome b-c1 complex subunit 9 9913
38 5GUP 52 1, Ac Cytochrome b-c1 complex subunit 9 9823
39 5GPN 10 J, L Cytochrome b-c1 complex subunit 9 9913
40 5J8K 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
41 5J7Y 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
42 5J4Z 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
43 2YBB 18 J, j CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913 7.1.1.8 | Details