Sequence Similarity Clusters for the Entities in PDB 1L0N

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1240
95 % 13 40 1071 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 13 44 944
70 % 13 61 618
50 % 13 61 659
40 % 13 61 681
30 % 13 61 725
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 38 814
95 % 13 43 962 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 13 43 998
70 % 13 60 605
50 % 13 60 660
40 % 13 60 682
30 % 13 60 726
Entity #11 | Chains: K
cytochrome b-c1 complex 6.4K protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 77386
95 % 10 22 2469 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 23 2295
70 % 10 26 1898
50 % 10 26 1946
40 % 10 26 1989
30 % 10 26 2023
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1368
95 % 13 41 1072 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 13 45 1004
70 % 13 62 619
50 % 13 62 658
40 % 13 62 687
30 % 13 62 724
Entity #3 | Chains: C
Cytochrome B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 1102
95 % 13 31 1507 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 13 40 1056
70 % 13 60 616
50 % 19 70 547
40 % 19 70 583
30 % 19 70 612
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1270
95 % 13 36 1227 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 13 39 1126
70 % 13 53 718
50 % 19 62 646
40 % 19 62 671
30 % 22 72 482
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 1777
95 % 13 32 1449 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 3.0
PDBFlex
90 % 13 38 1203
70 % 13 52 756
50 % 19 61 684
40 % 19 61 706
30 % 19 61 749
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1345
95 % 13 39 1030 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 42 1022
70 % 13 60 612
50 % 13 60 665
40 % 13 60 686
30 % 13 60 722
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1153
95 % 13 39 1033 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 13 42 1028
70 % 13 46 917
50 % 13 60 662
40 % 13 60 683
30 % 13 60 727
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1898
95 % 13 33 1376 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1409
70 % 13 47 850
50 % 13 47 885
40 % 13 47 919
30 % 13 47 964
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 2905
95 % 10 17 3302 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 10 18 2968
70 % 10 18 3014
50 % 10 20 2601
40 % 10 20 2633
30 % 10 20 2615

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures