Sequence Similarity Clusters for the Entities in PDB 1KN9

Entity #1 | Chains: A,B,C,D
Signal peptidase I protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14237
95 % 3 6 4699 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.1
PDBFlex
90 % 3 6 4755
70 % 3 6 4704
50 % 3 6 4576
40 % 3 6 4474
30 % 3 6 4346

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1B12 1 A, B, C, D SIGNAL PEPTIDASE I CATALYTIC DOMAIN 562 3.4.21.89 | Details
2 3IIQ 1 A, B SIGNAL PEPTIDASE I UNP RESIDUES 76-323, PERIPLASMIC DOMAIN 562 3.4.21.89 | Details
3 1KN9 1 A, B, C, D Signal peptidase I Residues 76-323, plus initiating methionine 562 3.4.21.89 | Details
4 6B88 1 A, B Signal peptidase I 562 3.4.21.89 | Details
5 1T7D 1 A, B SIGNAL PEPTIDASE I RESIDUES 76-324 562 3.4.21.89 | Details
6 3S04 1 A, B Signal peptidase I Periplasmic domain, UNP residues 76-323 562 3.4.21.89 | Details