Sequence Similarity Clusters for the Entities in PDB 1KN4

Entity #1 | Chains: L
IG ANTIBODY D2.3 (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 18311
95 % 5 11 7155 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 21 55 781
70 % 489 2391 2
50 % 612 3030 2
40 % 612 3030 2
30 % 1262 6153 1
Entity #2 | Chains: H
IG ANTIBODY D2.3 (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 9210
95 % 5 9 9525 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 5 10 8567
70 % 602 2928 1
50 % 640 3079 1
40 % 640 3079 1
30 % 1263 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures